[med-svn] [artemis] annotated tag debian/16.0.0+dfsg-5 created (now ea8ff16)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a change to annotated tag debian/16.0.0+dfsg-5
in repository artemis.

        at  ea8ff16   (tag)
   tagging  2a39317ebb6b217745277338a9c0a9d138000746 (commit)
  replaces  upstream/16.0.0+dfsg
 tagged by  Afif Elghraoui
        on  Sat Mar 26 12:31:15 2016 -0700

- Log -----------------------------------------------------------------
artemis (16.0.0+dfsg-5) unstable; urgency=medium

  [ Steffen Moeller and Jon Ison ]
  * Introduced EDAM annotation

  [ Sascha Steinbiss ]
  * Bump Standards-Version
  * Use secure Vcs-*

  [ Sascha Steinbiss and Afif Elghraoui ]
  * Patch code to use new htsjdk API (Closes: #808851)
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Afif Elghraoui (45):
      Initial packaging
      Refactor to allow tweaking CLASSPATH from within d/rules
      Add the source directory to the CLASSPATH
      Fix typo in the jar file name for libcommons-net2
      Fix typo in one of the batik jar file names
      Patch source to allow code to compile with external jars
      Remove patch that removes the javac language version flag
      Add jemboss jar files to the CLASSPATH
      Use javahelper in d/rules
      Add artemis.install
      Add patch to allow jar files to be built without 3rd-party files
      Remove unnecessary items from the CLASSPATH
      Add symlinks to jars to activate jarwrapper
      Add manifest file for the jars
      Add ITP number to d/changelog
      Add manpage for art based on upstream's wrapper script help
      Set up build-time testing
      Add .desktop files to make menu entries
      Add patch to make the build-time tests work
      Forgot to commit changes to d/install to include the .desktop files
      Add manpage stubs for other binaries and cross-references
      Resize icon so that it matches one of the predefined sizes
      Fix issues with .desktop files
      Add d/watch monitoring github releases page
      Update d/copyright
      Remove debian/TODO
      Set status as UNRELEASED pending copyright clarifications
      Mark patch as forwarded
      Revise d/copyright based on the copy of the /current/ source distribution
      artemis (16.0.0+dfsg-1) unstable; urgency=low
      Declare LGPL-licensed material from the same authors...
      Merge branch 'master' of git+ssh://git.debian.org/git/debian-med/artemis
      Rename artemis.desktop to avoid file name conflict
      Set new changelog entry
      artemis (16.0.0+dfsg-2) unstable; urgency=medium
      Add upstream-contact and update project homepage link
      Add /usr/bin/bamview and a desktop entry for it
      Note in the description that additional utilities are included
      artemis (16.0.0+dfsg-3) unstable; urgency=medium
      Add explicit dependency on unversioned biojava package
      artemis (16.0.0+dfsg-4) unstable; urgency=high
      Set up a new revision
      Try to update interface to picard/htsjdk
      Update email address
      artemis (16.0.0+dfsg-5) unstable; urgency=medium

Andreas Tille (4):
      Add publication data
      Add jemboss Build-Depends
      Put the latest publication on top since tasks pages currently only take the first item
      On a Debian system you actually have received a copy as the next paragraph states - so we can easily avoid the lintian warning

Emmanuel Bourg (1):
      Depend on libcommons-net-java instead of libcommons-net2-java

Sascha Steinbiss (4):
      rename methods to avoid name clash in Java 8
      fix FTBFS by adjusting API calls
      bump Standards-Version
      use secure Vcs-*

Steffen Moeller (1):
      Introduced EDAM annotation

-----------------------------------------------------------------------

This annotated tag includes the following new commits:

       new  d9357f9   Update email address
       new  2a39317   artemis (16.0.0+dfsg-5) unstable; urgency=medium

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


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