[med-svn] r21628 - trunk/packages/seer/trunk/debian

[Andreas Tille]

Author: tille
Date: 2016-03-31 07:01:12 +0000 (Thu, 31 Mar 2016)
New Revision: 21628

Added:
   trunk/packages/seer/trunk/debian/README.Debian
   trunk/packages/seer/trunk/debian/examples
Modified:
   trunk/packages/seer/trunk/debian/control
   trunk/packages/seer/trunk/debian/rules
Log:
Polish packaging


Added: trunk/packages/seer/trunk/debian/README.Debian
===================================================================
--- trunk/packages/seer/trunk/debian/README.Debian	                        (rev 0)
+++ trunk/packages/seer/trunk/debian/README.Debian	2016-03-31 07:01:12 UTC (rev 21628)
@@ -0,0 +1,12 @@
+seer for Debian
+===============
+
+For more detailed documentation please see the seer Wiki page:
+
+    https://github.com/johnlees/seer/wiki/Usage
+
+There is also an example wrapper script in
+
+    examples/example_wrapper.py
+
+ -- Andreas Tille <tille at debian.org>  Tue, 29 Mar 2016 19:32:29 +0200

Modified: trunk/packages/seer/trunk/debian/control
===================================================================
--- trunk/packages/seer/trunk/debian/control	2016-03-31 06:30:31 UTC (rev 21627)
+++ trunk/packages/seer/trunk/debian/control	2016-03-31 07:01:12 UTC (rev 21628)
@@ -6,13 +6,14 @@
 Build-Depends: debhelper (>= 9),
                libarmadillo-dev,
                libdlib-dev,
-               libhdf5-mpi-dev | libhdf5-dev,
+               libhdf5-dev,
+#              libhdf5-mpi-dev,
                libgzstream-dev,
                libboost-dev
 Standards-Version: 3.9.7
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/seer/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/seer/trunk/
-Homepage: <homepage>
+Homepage: https://github.com/johnlees/seer
 
 Package: seer
 Architecture: any
@@ -31,5 +32,4 @@
  clonal population structure of bacteria. Using large collections of
  genomes of the major human pathogen Streptococcus pneumoniae, SEER
  identifies relevant previously characterised resistance determinants for
- several antibiotics. We thus demonstrate that our method can answer
- important biologically and medically relevant questions.
+ several antibiotics.

Added: trunk/packages/seer/trunk/debian/examples
===================================================================
--- trunk/packages/seer/trunk/debian/examples	                        (rev 0)
+++ trunk/packages/seer/trunk/debian/examples	2016-03-31 07:01:12 UTC (rev 21628)
@@ -0,0 +1 @@
+example_wrapper.py

Modified: trunk/packages/seer/trunk/debian/rules
===================================================================
--- trunk/packages/seer/trunk/debian/rules	2016-03-31 06:30:31 UTC (rev 21627)
+++ trunk/packages/seer/trunk/debian/rules	2016-03-31 07:01:12 UTC (rev 21628)
@@ -1,6 +1,7 @@
 #!/usr/bin/make -f
 
 # DH_VERBOSE := 1
+DEBPKGNAME     := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
 
 include /usr/share/dpkg/architecture.mk
 export CPATH := /usr/include/hdf5/serial
@@ -8,5 +9,9 @@
 
 export LDFLAGS+=-pthread
 
+override_dh_auto_install:
+	dh_auto_install -- PREFIX=$(CURDIR)/debian/$(DEBPKGNAME)/usr
+	cp -a scripts/blast_top_hits.pl $(CURDIR)/debian/$(DEBPKGNAME)/usr/bin/blast_top_hits
+
 %:
 	dh $@