[med-svn] [augustus] 01/01: add augustus doc package

[Sascha Steinbiss]

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sascha-guest pushed a commit to branch master
in repository augustus.

commit afc8458161d92864723f4247826a4b5cec6037b9
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date:   Thu Mar 31 23:14:15 2016 +0000

    add augustus doc package
    
    ...to comply with policy v3.9.7
---
 debian/augustus-doc.doc-base | 18 ++++++++++++++++++
 debian/control               | 12 +++++++++++-
 debian/rules                 |  5 +++--
 3 files changed, 32 insertions(+), 3 deletions(-)

diff --git a/debian/augustus-doc.doc-base b/debian/augustus-doc.doc-base
new file mode 100644
index 0000000..a0aacb3
--- /dev/null
+++ b/debian/augustus-doc.doc-base
@@ -0,0 +1,18 @@
+Document: augustus
+Title: AUGUSTUS manuals
+Author: AUGUSTUS authors
+Abstract: README-style manuals for AUGUSTUS
+ These files explain how to use AUGUSTUS, e.g. how the theoretical model works,
+ how to set up a personalized species directory, or how to prepare hints files.
+ Another manual focuses on the comparative gene prediction (cgp) functionality
+ in AUGUSTUS while yet another describes the custom training process for new
+ species parameters.
+Section: Science/Biology
+
+Format: Text
+Files: /usr/share/doc/augustus/*.txt.gz
+Files: /usr/share/doc/augustus/*.TXT.gz
+
+Format: HTML
+Files: /usr/share/doc/augustus/retraining.html
+Index: /usr/share/doc/augustus/retraining.html
diff --git a/debian/control b/debian/control
index 9b2aa53..5c8a5a3 100644
--- a/debian/control
+++ b/debian/control
@@ -25,7 +25,7 @@ Depends: ${shlibs:Depends},
          libncurses5
 Description: gene prediction in eukaryotic genomes
  AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences
- that is based on a generalized hidden Markov model, a probabilistic
+ that is based on a generalized hidden Markov model (HMM), a probabilistic
  model of a sequence and its gene structure. After learning gene structures
  from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new
  sequence and annotates it with the regions of identified genes. External hints,
@@ -43,3 +43,13 @@ Description: data files for AUGUSTUS
  This package contains pre-trained species models and other required
  architecture-independent data files for the AUGUSTUS gene finder. These are
  needed to identify gene structures in these or related organisms.
+
+Package: augustus-doc
+Architecture: all
+Depends: ${misc:Depends}
+Section: doc
+Description: documentation files for AUGUSTUS
+ This package contains documentation for AUGUSTUS: a comprehensive manual-style
+ README both for AUGUSTUS in general as well as for its comparative gene
+ prediction (cgp) mode, as well as a HTML documentation on retraining AUGUSTUS
+ parameters for new species.
diff --git a/debian/rules b/debian/rules
index 1936326..61b18b8 100755
--- a/debian/rules
+++ b/debian/rules
@@ -37,8 +37,9 @@ override_dh_auto_install:
 	chmod -R -x    debian/augustus/usr/share/augustus/scripts/*
 	chmod +x       debian/augustus/usr/share/augustus/scripts/checkUTR \
 	               debian/augustus/usr/share/augustus/scripts/*.pl
-	cp README*     debian/augustus/usr/share/augustus
-	cp retraining* debian/augustus/usr/share/augustus
+	mkdir -p       debian/augustus-doc/usr/share/doc/augustus
+	cp README*     debian/augustus-doc/usr/share/doc/augustus
+	cp retraining* debian/augustus-doc/usr/share/doc/augustus
 	mkdir -p       debian/augustus-data/usr/share/augustus
 	cp -r config   debian/augustus-data/usr/share/augustus
 	find           debian/augustus-data/usr/share/augustus \

-- 
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