[med-svn] [jaligner] 01/01: asciidoctor to make build reproducible

[Michael Crusoe]

This is an automated email from the git hooks/post-receive script.

misterc-guest pushed a commit to tag debian/1.0+dfsg-2
in repository jaligner.

commit 77448e6266d03b9dd586b1b63d01d362882b9e67
Author: Michael R. Crusoe <michael.crusoe at gmail.com>
Date:   Wed May 4 11:40:28 2016 -0700

    asciidoctor to make build reproducible
---
 debian/changelog     |  7 +++++++
 debian/control       |  8 ++++----
 debian/jaligner.adoc | 24 ++++++++++++++++++++++++
 debian/jaligner.ronn | 16 ----------------
 debian/rules         |  2 +-
 5 files changed, 36 insertions(+), 21 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 9480f7d..412edf2 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,10 @@
+jaligner (1.0+dfsg-2) unstable; urgency=medium
+
+  * Make build reproducible by switching to asciidoctor from ruby-ronn for
+    manual page generation. 
+
+ -- Michael R. Crusoe <michael.crusoe at gmail.com>  Wed, 04 May 2016 15:23:47 -0700
+
 jaligner (1.0+dfsg-1) unstable; urgency=medium
 
   * Initial release. (Closes: #778489)
diff --git a/debian/control b/debian/control
index 35a4645..70175bc 100644
--- a/debian/control
+++ b/debian/control
@@ -1,7 +1,7 @@
 Source: jaligner
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Tim Booth <tbooth at ceh.ac.uk>,
-           Michael R. Crusoe <crusoe at ucdavis.edu>
+           Michael R. Crusoe <michael.crusoe at gmail.com>
 Section: science
 Priority: optional
 Build-Depends: debhelper (>= 9),
@@ -9,10 +9,10 @@ Build-Depends: debhelper (>= 9),
 Build-Depends-Indep: junit4,
                      javahelper,
                      icedtea-netx-common,
-                     ruby-ronn
-Standards-Version: 3.9.6
+                     asciidoctor
+Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/jaligner.git
-Vcs-Git: git://anonscm.debian.org/debian-med/jaligner.git
+Vcs-Git: https://anonscm.debian.org/git/debian-med/jaligner.git
 Homepage: https://github.com/ahmedmoustafa/JAligner
 
 Package: jaligner
diff --git a/debian/jaligner.adoc b/debian/jaligner.adoc
new file mode 100644
index 0000000..43516a1
--- /dev/null
+++ b/debian/jaligner.adoc
@@ -0,0 +1,24 @@
+jaligner(1)
+===========
+:doctype: manpage
+
+NAME
+----
+jaligner - Smith-Waterman algorithm with Gotoh's improvement
+
+SYNOPSIS
+--------
+
+`jaligner` <s1> <s2> <matrix> <open> <extend>
+
+Or just type `jaligner` to see the GUI.
+
+EXAMPLES
+--------
+
+`jaligner` p53_{human,mouse}.fasta BLOSUM62 10 0.5
+
+Homepage
+--------
+
+http://jaligner.sourceforge.net/
diff --git a/debian/jaligner.ronn b/debian/jaligner.ronn
deleted file mode 100644
index abd1aa1..0000000
--- a/debian/jaligner.ronn
+++ /dev/null
@@ -1,16 +0,0 @@
-jaligner(1) -- Smith-Waterman algorithm with Gotoh's improvement
-==========
-
-## SYNOPSIS
-
-`jaligner` <s1> <s2> <matrix> <open> <extend>
-
-Or just type `jaligner` to see the GUI.
-
-## EXAMPLES
-
-`jaligner` p53_{human,mouse}.fasta BLOSUM62 10 0.5
-
-## Homepage
-
- http://jaligner.sourceforge.net/
diff --git a/debian/rules b/debian/rules
index 72862b6..d35a209 100755
--- a/debian/rules
+++ b/debian/rules
@@ -13,7 +13,7 @@ override_dh_auto_build:
 	#cp -a debian/images/*.gif src/jaligner/ui/images/gifs
 	jh_build -J jaligner.jar src
 	#rm -f src/jaligner/ui/images/gifs/[a-ik-z]*.gif
-	ronn -r debian/jaligner.ronn
+	asciidoctor --backend manpage debian/jaligner.adoc
 
 override_dh_install:
 	dh_install src/jaligner /usr/share/jaligner

-- 
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