[med-svn] [mothur] 05/07: propagate hardening options to uchime build

[Andreas Tille]

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tille pushed a commit to branch master
in repository mothur.

commit f5848ec77e94f9f8f71526fcc36e9b6f46bc7ddf
Author: Andreas Tille <tille at debian.org>
Date:   Sat May 7 17:52:43 2016 +0200

    propagate hardening options to uchime build
---
 debian/changelog               |  1 +
 debian/patches/hardening.patch | 15 +++++++++++++++
 debian/patches/series          |  1 +
 3 files changed, 17 insertions(+)

diff --git a/debian/changelog b/debian/changelog
index 9c621d6..66e53f1 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -3,6 +3,7 @@ mothur (1.36.1-2) unstable; urgency=medium
   * New upstream version
   * cme fix dpkg-control
   * better description for mothur-mpi
+  * propagate hardening options to uchime build
 
  -- Steffen Moeller <moeller at debian.org>  Fri, 05 Feb 2016 22:01:39 +0100
 
diff --git a/debian/patches/hardening.patch b/debian/patches/hardening.patch
new file mode 100644
index 0000000..b30d72f
--- /dev/null
+++ b/debian/patches/hardening.patch
@@ -0,0 +1,15 @@
+Dscription: propagate hardening options to uchime build
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Sat, 07 May 2016 16:01:33 +0200
+
+--- a/source/uchime_src/mk
++++ b/source/uchime_src/mk
+@@ -17,7 +17,7 @@ LINK_OPTS=
+ #if [ `uname -s` == Linux ] ; then
+ #    LINK_OPTS=-static
+ #fi
+-g++ $LINK_OPTS $ENV_LINK_OPTS -g -o uchime $ObjNames >> mk.stdout 2>> tmp.stderr
++g++ $LINK_OPTS $ENV_LINK_OPTS -g -o uchime $ObjNames $(LDFLAGS) >> mk.stdout 2>> tmp.stderr
+ cat tmp.stderr
+ cat tmp.stderr >> mk.stderr
+ rm -f tmp.stderr
diff --git a/debian/patches/series b/debian/patches/series
index 7b40027..8813742 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1 +1,2 @@
 0008-Fix-catchall-command.patch
+hardening.patch

-- 
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