[med-svn] r21888 - in trunk/packages/R/r-bioc-000-dependency-scheme: . 3.3
Andreas Tille
tille at moszumanska.debian.org
Sun May 8 18:17:42 UTC 2016
Author: tille
Date: 2016-05-08 18:17:41 +0000 (Sun, 08 May 2016)
New Revision: 21888
Added:
trunk/packages/R/r-bioc-000-dependency-scheme/3.3/
trunk/packages/R/r-bioc-000-dependency-scheme/3.3/BioC_3.3-dependency-tree.ditaa
trunk/packages/R/r-bioc-000-dependency-scheme/3.3/Makefile
Log:
Inject updated dependency scheme
Added: trunk/packages/R/r-bioc-000-dependency-scheme/3.3/BioC_3.3-dependency-tree.ditaa
===================================================================
--- trunk/packages/R/r-bioc-000-dependency-scheme/3.3/BioC_3.3-dependency-tree.ditaa (rev 0)
+++ trunk/packages/R/r-bioc-000-dependency-scheme/3.3/BioC_3.3-dependency-tree.ditaa 2016-05-08 18:17:41 UTC (rev 21888)
@@ -0,0 +1,96 @@
+ +------------+
+ | cummerbund |
+ +------------+
+ ^
+ |
+ +---+--+
+ | gviz |
+ +------+
+ ^
+ +-------+ |
+ | edger | +------+-----+
+ +-------+ | biovizbase |
+ ^ +------+-----+
+ | ^
+ +---+---+ +------------+ +--------+ |
+ | limma | | hilbertvis | | qvalue | +----------+--------+
+ +-------+ +------------+ +--------+ | variantannotation |
+ ^ +-------------------+
+ : ^ ^
+ : | |
+ +------+------+ +------------+----+ +-+---------+
+ |cAAA go.db | | genomicfeatures | | bsgenome |
+ +-------------+ +--------------+ +-----------------+ +-----------+
+ | altcdfenvs | ^ ^ ^
+ +--------------+ | | |
+ ^ ^ ^ | +--+-------+--+
+ | | | | | rtracklayer |
+ +----------------------------------+ | | | +-------------+
+ | | | | ^
+ | +-----------++ | +-------------+ |
+ | | makecdfenv | | +-----------+ | +----------+--------+
+ | +------------+ | +----------------------->| shortread |<-------|---------------+ genomicalignments |
+ | ^ | | +-----------+ | +-------------------+
+ | | | | | ^ ^
+ | | | | | | |
+ | | | | | +-----------+--+ +--------+-------------+
+ | | +----------------+ +------------------------------------>| rsamtools | | summarizedexperiment |
+ | | | | | | +--------------+ +----------------------+
+ | | | | | | ^ ^: ^ ^ ^
+ | | | | | | | |: : | |
+ | | | | | +=============|=========|=========|:======+ | |
+ | | | | | : | | |: | |
++------+-----+ +-------+--+ | +--+-----+---+ +--------+---+ +------+--+ | |: | |
+| hypergraph | | affy |<-----------+ | | biostrings | | annotate | | biomart | | |: | |
++------------+ +----------+ | | +------------+ +------------+ +---------+ | |: | |
+ ^ ^ ^ ^ | | ^ ^ ^ | |: | |
+ | | | | | | | | | | |: | |
+ +---+---+ +----------------+ | ++--------+ | | | +--+----------+-+ +--------+------+ |: | |
+ | graph | | preprocesscore | | | affyio | | | | | annotationdbi | | genomicranges +--|:-----------+ |
+ +-------+ +----------------+ | +---------+ | | | +---------------+ +---------------+ |: |
+ ^ | | | | ^ ^ ^ ^ |: |
+ | | | | | | | | | |: |
+ | +--------+------+ | | +---------|-----------------+ | | | |: |
+ | | biocinstaller | | | | | | | | |: |
+ | +---------------+ | | | | +----------------------|--------+ | |: |
+ | | | | | | | | |: |
+ | | | | +---+---+-+ +-+-----------++ |: |
+ | | | | | xvector | | genomeinfodb | |: |
+ | | | | +---------+ +--------------+ |: |
+ | | | | ^ ^ |: |
+ | | | | | | |: |
+ | +----------+ | | | +---+-----+ | |: |
+ | | multtest | | | | | iranges +-------------------------+ |: |
+ | +----------+ | | | +-----+---+ |: |
+ | ^ | | | ^ : |: |
+ | | +-+--+--+-+ | : |: |
+ | +--------------+ biobase +-------|-:--------------------------------------------------|:---------------+
+ | +---------+ | v |v
+ | ^ +---+-------+ +----------+---+
+ | | +----->| s4vectors | | biocparallel |
+ | | | +-----------+ +--------------+
+ | | | ^
+ | | | |
+ | | | +---------------------------------------------------+
+ | | | |
+ | +-----+--+---+-+ +----------+
+ +------------------------------------------+ biocgenerics +------------------------------------------------------------------>| snpstats |
+ +--------------+ +----------+
+
+
+
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+
+
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+
Added: trunk/packages/R/r-bioc-000-dependency-scheme/3.3/Makefile
===================================================================
--- trunk/packages/R/r-bioc-000-dependency-scheme/3.3/Makefile (rev 0)
+++ trunk/packages/R/r-bioc-000-dependency-scheme/3.3/Makefile 2016-05-08 18:17:41 UTC (rev 21888)
@@ -0,0 +1,14 @@
+#!/usr/bin/make -f
+
+NAME:=BioC_3.3-dependency-tree
+
+all: png
+
+png: $(NAME).png
+
+%.png: %.ditaa
+ rm -f $@
+ ditaa $^
+
+clean:
+ rm -f $(NAME).png
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