[med-svn] r21903 - in trunk/packages/R/r-bioc-rsamtools/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2016-05-09 06:30:51 +0000 (Mon, 09 May 2016)
New Revision: 21903

Modified:
   trunk/packages/R/r-bioc-rsamtools/trunk/debian/changelog
   trunk/packages/R/r-bioc-rsamtools/trunk/debian/control
   trunk/packages/R/r-bioc-rsamtools/trunk/debian/patches/use_debian_packaged_zlib.patch
Log:
New upstream version


Modified: trunk/packages/R/r-bioc-rsamtools/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-rsamtools/trunk/debian/changelog	2016-05-08 19:33:48 UTC (rev 21902)
+++ trunk/packages/R/r-bioc-rsamtools/trunk/debian/changelog	2016-05-09 06:30:51 UTC (rev 21903)
@@ -1,3 +1,10 @@
+r-bioc-rsamtools (1.24.0-1) unstable; urgency=medium
+
+  * New upstream version
+  * Fix versioned Dependencies
+
+ -- Andreas Tille <tille at debian.org>  Sun, 08 May 2016 21:06:24 +0200
+
 r-bioc-rsamtools (1.22.0-2) unstable; urgency=medium
 
   * Fix autopkgtest by adding r-cran-runit

Modified: trunk/packages/R/r-bioc-rsamtools/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-rsamtools/trunk/debian/control	2016-05-08 19:33:48 UTC (rev 21902)
+++ trunk/packages/R/r-bioc-rsamtools/trunk/debian/control	2016-05-09 06:30:51 UTC (rev 21903)
@@ -7,8 +7,8 @@
                cdbs,
                r-base-dev,
                r-cran-bitops,
-               r-bioc-biostrings (>= 2.38.0),
-               r-bioc-genomicranges (>= 1.22.0),
+               r-bioc-biostrings (>= 2.40.0),
+               r-bioc-genomicranges (>= 1.24.0),
                r-bioc-biocparallel,
                libbam-dev
 Standards-Version: 3.9.8
@@ -22,8 +22,8 @@
          ${misc:Depends},
          ${shlibs:Depends},
          r-cran-bitops,
-         r-bioc-biostrings (>= 2.34.0),
-         r-bioc-genomicranges (>= 1.18.0),
+         r-bioc-biostrings (>= 2.40.0),
+         r-bioc-genomicranges (>= 1.24.0),
          r-bioc-biocparallel
 Recommends: r-bioc-shortread
 Description: GNU R binary alignment (BAM), variant call (BCF), or tabix file import

Modified: trunk/packages/R/r-bioc-rsamtools/trunk/debian/patches/use_debian_packaged_zlib.patch
===================================================================
--- trunk/packages/R/r-bioc-rsamtools/trunk/debian/patches/use_debian_packaged_zlib.patch	2016-05-08 19:33:48 UTC (rev 21902)
+++ trunk/packages/R/r-bioc-rsamtools/trunk/debian/patches/use_debian_packaged_zlib.patch	2016-05-09 06:30:51 UTC (rev 21903)
@@ -6,11 +6,11 @@
 --- a/DESCRIPTION
 +++ b/DESCRIPTION
 @@ -17,7 +17,7 @@ LazyLoad: yes
- Depends: methods, S4Vectors (>= 0.7.11), IRanges (>= 2.3.7),
-         GenomeInfoDb (>= 1.1.3), GenomicRanges (>= 1.21.6), XVector (>=
-         0.9.1), Biostrings (>= 2.37.1)
--Imports: utils, BiocGenerics (>= 0.1.3), zlibbioc, bitops, BiocParallel
-+Imports: utils, BiocGenerics (>= 0.1.3), bitops, BiocParallel
+ Depends: methods, GenomeInfoDb (>= 1.1.3), GenomicRanges (>= 1.21.6),
+         Biostrings (>= 2.37.1)
+ Imports: utils, BiocGenerics (>= 0.1.3), S4Vectors (>= 0.7.11), IRanges
+-        (>= 2.3.7), XVector (>= 0.9.1), zlibbioc, bitops, BiocParallel
++        (>= 2.3.7), XVector (>= 0.9.1), bitops, BiocParallel
  Suggests: GenomicAlignments, ShortRead (>= 1.19.10), GenomicFeatures,
          TxDb.Dmelanogaster.UCSC.dm3.ensGene, KEGG.db,
          TxDb.Hsapiens.UCSC.hg18.knownGene, RNAseqData.HNRNPC.bam.chr14,