[med-svn] r21907 - in trunk/packages/R/r-bioc-genomicalignments/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2016-05-09 07:34:08 +0000 (Mon, 09 May 2016)
New Revision: 21907

Modified:
   trunk/packages/R/r-bioc-genomicalignments/trunk/debian/changelog
   trunk/packages/R/r-bioc-genomicalignments/trunk/debian/patches/disable-testing-pasillaBamSubset.patch
Log:
New upstream version


Modified: trunk/packages/R/r-bioc-genomicalignments/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-genomicalignments/trunk/debian/changelog	2016-05-09 06:52:11 UTC (rev 21906)
+++ trunk/packages/R/r-bioc-genomicalignments/trunk/debian/changelog	2016-05-09 07:34:08 UTC (rev 21907)
@@ -1,3 +1,9 @@
+r-bioc-genomicalignments (1.8.0-1) unstable; urgency=medium
+
+  * New upstream version
+
+ -- Andreas Tille <tille at debian.org>  Mon, 09 May 2016 09:24:38 +0200
+
 r-bioc-genomicalignments (1.6.3-1) unstable; urgency=medium
 
   * New upstream version

Modified: trunk/packages/R/r-bioc-genomicalignments/trunk/debian/patches/disable-testing-pasillaBamSubset.patch
===================================================================
--- trunk/packages/R/r-bioc-genomicalignments/trunk/debian/patches/disable-testing-pasillaBamSubset.patch	2016-05-09 06:52:11 UTC (rev 21906)
+++ trunk/packages/R/r-bioc-genomicalignments/trunk/debian/patches/disable-testing-pasillaBamSubset.patch	2016-05-09 07:34:08 UTC (rev 21907)
@@ -84,7 +84,7 @@
 -    checkIdentical(tbl[["unmated"]], 21227L)
 -
 -    ## GAlignmentPairs holds concordant (opposite strand) pairs
--    samestrand <- galist[elementLengths(runValue(strand(galist))) == 1L]
+-    samestrand <- galist[elementNROWS(runValue(strand(galist))) == 1L]
 -    samestrandp <- sum(mcols(samestrand)$mate_status == "mated")
 -    checkIdentical(tbl[["mated"]] - samestrandp, length(galp))
 -}