[med-svn] [prottest] 06/08: Use debian packaged phyml

[Andreas Tille]

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tille pushed a commit to branch master
in repository prottest.

commit e7ce61c9ba69bfb4dbb05bb01ac010bda444294b
Author: Andreas Tille <tille at debian.org>
Date:   Mon May 9 21:30:13 2016 +0200

    Use debian packaged phyml
---
 debian/patches/series                          |  2 +-
 debian/patches/use_debian_packaged_phyml.patch | 15 +++++++++++++++
 2 files changed, 16 insertions(+), 1 deletion(-)

diff --git a/debian/patches/series b/debian/patches/series
index 5879227..6f3a075 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1 +1 @@
-build.patch
+use_debian_packaged_phyml.patch
diff --git a/debian/patches/use_debian_packaged_phyml.patch b/debian/patches/use_debian_packaged_phyml.patch
new file mode 100644
index 0000000..c08a791
--- /dev/null
+++ b/debian/patches/use_debian_packaged_phyml.patch
@@ -0,0 +1,15 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Mon, 09 May 2016 21:03:00 +0200
+Description: Follow a hint from upstream how to uses system wide installed phyml
+
+--- a/src/main/resources/prottest.properties
++++ b/src/main/resources/prottest.properties
+@@ -20,7 +20,7 @@ analyzer=phyml
+ # and ProtTest will use the global binary instead of   
+ # local ones.                                            
+ # ------------------------------------------------------------------
+-global-phyml-exe    = false
++global-phyml-exe    = true
+ exe-dir	            = bin
+ 
+ # -------------------------------------------------------------------

-- 
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