[med-svn] [bart] annotated tag v0.3.01 created (now ccc8e93)
Martin Uecker
uecker-guest at moszumanska.debian.org
Tue May 10 19:06:09 UTC 2016
This is an automated email from the git hooks/post-receive script.
uecker-guest pushed a change to annotated tag v0.3.01
in repository bart.
at ccc8e93 (tag)
tagging 0465da44e0ac616b7091cab9ddaef0fa90cbcd31 (commit)
replaces v0.3.00
tagged by Martin Uecker
on Sun May 1 20:34:54 2016 +0200
- Log -----------------------------------------------------------------
version 0.3.01
Changes:
- automatic build testing for Linux and MacOS X
- automatic tests for some tools
- a unit testing framework for functions
- python wrapper: bart.py
- fix problem with matlab wrapper
- change default path for fftw on Mac OS X
- new tools: carg, wavg
- carg: complex argumemt
- wavg: weighted average
- library: tools for chebyshev approximation
- library: improvements for type safety
- many other bug fixes and enhancements
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Frank Ong (10):
fixed fftw path for mac in Makefile.
add preconditioner operator to lsqr
added preconditioner interface for lsqr, pics and sense_recon
added GTAGS to .gitignore.main
added Strang's preconditioner for nufft
comment
turn off preconditioner in pics
added reference to Strang's preconditioner and style change
Merge pull request #26 from grlee77/grecon_fix
Merge pull request #27 from mrirecon/build
Gregory R. Lee (1):
add missing argument to sense_recon_gpu in grecon.c
Jon Tamir (7):
Merge pull request #30 from sidward/master
Merge pull request #33 from sidward/master
Merge pull request #34 from mrirecon/tests
- redo testing based on minunit.h
utests/Makefile: use macros and run tests with command "make run"
adjust debug levels
unit tests:
Jonathan Tamir (24):
add wavg (weighted average) tool
add rule to make Doxygen documentation
minor
carg/poisson: update help string and style
use const char array for constant string literals
version: output information about dependencies with (-V)
unhide some help options
bpsense:change debug levels
add prox function for l2norm
prox_l2norm: use mu instead of 1/mu
add alternate iter2 interface with support for affine constraints
pics: only add l2 if lambda > 0.
adjust debug levels
extend admm to handle affine constraints
add new tool: sqpics for parallel imaging and compressed sensing using
use correct strides in md_zwavg2
show: allow custom separator
use correct strides in md_transpose
fix debug_print when using debug_logging
homodyne:improve help description
gitignore: remove bbox and add tests
add unit test
cleanup
add more test cases
Martin Uecker (78):
add parallel loop
add md_parallel_zsample
parallelize phantom
grasp.sh: use show
move TYPE_CHECK to misc.h and use it in flpmath.c
add debug prints to lsqr
CUDA compile fix
add carg
copyright, formatting
PTR_ALLOC
minor Makefile changes for MacOSX
make fftwthreads optional
add dims + strides explanation
support for ra files (only complex float)
fix Matlab error (thanks to Lyu Mengye)
allow overwriting the compiler on Mac OS X
add build testing
Merge pull request #25 from frankong/master
add sedona ref
simplify makefile (remove bbox)
add operator/linop_loop
fix warning
refactor
3d radial trajectory
add MD_STRIDES
minor
cuda build test
also test clang-3.5
build test osx
update comments which (incorrectly) refer to former license
refactor optimized ops
typo
minor
use MD_STRIDES
regularization of imaginary component
build test for cuda: do not install so many packages
update ismrmrd support - still very limited
make ismrmrd a proper bart command
build fix
improve fftmod help, add -i option
add mdfft
make flags unsigned long + other changes
use simpler implementation of TYPE_CHECK
improve help for show
add CONTAINER_OF
make iter type-safe
more type safety in operator interface
gpu build fix
type safety for linop
make iter2 type-safe
type safety for iter3
fix warnings for gpu case
Merge pull request #31 from mrirecon/type-safety
use ARFLAGS
fix no randshift in lrthresh.c (thanks to Evan G. Levine)
pointless comments
no randshift in threshold.c
use tmp memory to implement in-place circ_shift
fix warning and minor style changes
change scaling of k-space phantom
nufft: add scale factors
add tests for fft
add test
change variable names
add phantom.mk
nufft tests
fix inverse
flip sensitivities to that it matches kspace with iFFT reco
test for phantom with coil
minor
tests for espirit + pics
compute_kernels: require svals != NULL
Merge pull request #36 from mrirecon/unit-tests
minor
workaround sanitizer
add chebfun library
use it for special functions
bump version
Siddharth (1):
Added matlab-like python tool
Siddharth Iyer (4):
Added some error checks to estvar
Edited weights of softweight
Edited gitignore.main to ignore noise simulations
Editted script 'sub' to call saxpy without throwing an error.
-----------------------------------------------------------------------
This annotated tag includes the following new commits:
new e391ef1 add parallel loop
new c63c126 add md_parallel_zsample
new 59a2507 parallelize phantom
new 647d085 grasp.sh: use show
new 2e465df move TYPE_CHECK to misc.h and use it in flpmath.c
new 9334bf9 fixed fftw path for mac in Makefile.
new 82a2a35 add debug prints to lsqr
new a3460b8 CUDA compile fix
new fe0e400 add wavg (weighted average) tool
new 0124612 add carg
new 74f2f8e copyright, formatting
new d3e4ed8 PTR_ALLOC
new c48fece minor Makefile changes for MacOSX
new 05be444 make fftwthreads optional
new d8949f0 add rule to make Doxygen documentation
new 98b245a minor
new 6ec4e9a carg/poisson: update help string and style
new 20181fa use const char array for constant string literals
new a9b9657 version: output information about dependencies with (-V)
new c726802 add dims + strides explanation
new aedbe32 support for ra files (only complex float)
new 52cc59a fix Matlab error (thanks to Lyu Mengye)
new 14b1249 Added matlab-like python tool
new 3ffb032 allow overwriting the compiler on Mac OS X
new 69d4d4e add build testing
new bad1b1f add preconditioner operator to lsqr
new 87cdb8f added preconditioner interface for lsqr, pics and sense_recon added doxygen comments for nufft structure added identity preconditioner for nufft that does nothing
new c985845 added GTAGS to .gitignore.main
new 44c8a86 added Strang's preconditioner for nufft
new 6068255 comment
new d30aeb7 turn off preconditioner in pics
new f7cd7d9 added reference to Strang's preconditioner and style change
new e714df9 Merge pull request #25 from frankong/master
new 47d2c85 add missing argument to sense_recon_gpu in grecon.c
new 2d109d4 Merge pull request #26 from grlee77/grecon_fix
new 3508b2d add sedona ref
new 560cc4c simplify makefile (remove bbox)
new a26ca08 add operator/linop_loop
new 2ad53b0 fix warning
new b66f708 refactor
new a5cfa92 3d radial trajectory
new f1c735a add MD_STRIDES
new f2932a0 minor
new fd4e6d3 cuda build test
new db333fb also test clang-3.5
new 69eae5e build test osx
new e266895 Merge pull request #27 from mrirecon/build
new 96150f1 update comments which (incorrectly) refer to former license
new 76975e0 refactor optimized ops
new dfdc827 typo
new 8cb6a05 minor
new c99fe82 use MD_STRIDES
new 116b1ac regularization of imaginary component
new 5cdeb08 build test for cuda: do not install so many packages
new ff2427e unhide some help options
new 20940b8 update ismrmrd support - still very limited
new 68df330 make ismrmrd a proper bart command
new c7c7b9f build fix
new 971f527 Added some error checks to estvar
new d0271ff Merge pull request #30 from sidward/master
new 718deec improve fftmod help, add -i option
new b367e63 add mdfft
new bd2e9e7 make flags unsigned long + other changes
new 1715fe9 bpsense:change debug levels
new d227bff add prox function for l2norm
new 99b9eb3 prox_l2norm: use mu instead of 1/mu
new d38ca65 add alternate iter2 interface with support for affine constraints
new aa47d7e pics: only add l2 if lambda > 0.
new 18ea7eb adjust debug levels
new fcf647b extend admm to handle affine constraints
new 5b641f8 add new tool: sqpics for parallel imaging and compressed sensing using square-root lasso formulation (WIP)
new 29c43bd use simpler implementation of TYPE_CHECK
new 2617313 improve help for show
new 959364f add CONTAINER_OF
new 508c263 make iter type-safe
new b48e1ce more type safety in operator interface
new 8ce586a gpu build fix
new 604ce6d type safety for linop
new 555d92d make iter2 type-safe
new 2fc24b1 type safety for iter3
new a936f69 fix warnings for gpu case
new 0e43760 Merge pull request #31 from mrirecon/type-safety
new f8e73e2 use correct strides in md_zwavg2
new 54d363e use ARFLAGS
new 8d4ee2b fix no randshift in lrthresh.c (thanks to Evan G. Levine)
new 9b7661e pointless comments
new 1586816 no randshift in threshold.c
new 6f42dbc use tmp memory to implement in-place circ_shift
new fb8094c show: allow custom separator
new 0d7352d use correct strides in md_transpose
new 7c35cf1 fix debug_print when using debug_logging
new d72118a homodyne:improve help description
new 074c0b3 Edited weights of softweight
new 89fe419 Edited gitignore.main to ignore noise simulations
new 6b8f41e fix warning and minor style changes
new ca08729 Editted script 'sub' to call saxpy without throwing an error.
new 5d7447c Merge pull request #33 from sidward/master
new aabded9 change scaling of k-space phantom
new 95c149f nufft: add scale factors
new 0ef3a54 add tests for fft
new e2c6956 add test
new 17a09f5 change variable names
new 5456973 add phantom.mk
new 25ec86b nufft tests
new d9ceece fix inverse
new 594d474 flip sensitivities to that it matches kspace with iFFT reco
new 4b01051 test for phantom with coil
new 1ce2eb7 minor
new 2e49a94 tests for espirit + pics
new f3f3898 Merge pull request #34 from mrirecon/tests
new a7da41e gitignore: remove bbox and add tests
new a0c42a2 compute_kernels: require svals != NULL
new 347cc7b add unit test
new e175771 cleanup
new e7dcbf9 add more test cases
new d382e6d - redo testing based on minunit.h - simplify zwavg testing
new f982626 utests/Makefile: use macros and run tests with command "make run"
new fbe901c adjust debug levels
new 074b38f Merge pull request #36 from mrirecon/unit-tests
new f07c61e unit tests: - add header files to make dependencies and make default as first make goal - add test for md_zfmac2 and consolidate into flpmath file. - autogen gitignore
new 4e7d93b minor
new e3b0f80 workaround sanitizer
new 2c2bfaa add chebfun library
new a42a2d0 use it for special functions
new 0465da4 bump version
The 125 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
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