[med-svn] [circlator] branch debian/jessie-backports updated (af901be -> fc94339)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a change to branch debian/jessie-backports
in repository circlator.

      from  af901be   releasing package circlator version 1.2.0-1~bpo8+1
      adds  0b93697   Fix typo in d/upstream/metadata
      adds  4065b8c   Add explicit build-dependency on bwa with proper minimum version
      adds  03b0ae8   Imported Upstream version 1.2.1
      adds  25f2238   Merge tag 'upstream/1.2.1'
      adds  10dd112   Refresh patches
      adds  b0ac069   Don't restrict pysam max version
      adds  793b9ac   Update minimum dependency versions
      adds  8d37990   Prepare new revision
      adds  0166c38   Update Standards-Version to 3.9.8
      adds  f62822a   releasing package circlator version 1.2.1-1
       new  bea0f2f   Merge tag 'debian/1.2.1-1' into debian/jessie-backports
       new  fc94339   releasing package circlator version 1.2.1-1~bpo8+1

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 circlator/__init__.py                      |  9 +++++++
 circlator/bamfilter.py                     | 20 ++++++++++++++-
 circlator/common.py                        |  2 --
 circlator/external_progs.py                | 10 +++-----
 circlator/tasks/all.py                     | 23 +++++++++++++++--
 circlator/tasks/bam2reads.py               |  2 ++
 circlator/tasks/progcheck.py               |  5 ++--
 circlator/tasks/version.py                 |  3 ++-
 circlator/versions.py                      | 40 ++++++++++++++++++++++++++++++
 debian/changelog                           | 17 +++++++++++++
 debian/control                             |  6 ++---
 debian/patches/bundle-bioassemblyref.patch |  6 ++---
 debian/patches/pysam-maxversion.patch      | 17 +++++++++++++
 debian/patches/series                      |  1 +
 debian/patches/spades-call.patch           |  2 +-
 debian/upstream/metadata                   |  2 +-
 setup.py                                   |  8 +++---
 17 files changed, 146 insertions(+), 27 deletions(-)
 create mode 100644 circlator/versions.py
 create mode 100644 debian/patches/pysam-maxversion.patch

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