[med-svn] [jmodeltest] 01/03: Add manual + doc-base

[Andreas Tille]

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tille pushed a commit to branch master
in repository jmodeltest.

commit b8c0f8cc9f76ad729cee4b08e1a6d27abfae31dc
Author: Andreas Tille <tille at debian.org>
Date:   Thu May 12 16:26:47 2016 +0200

    Add manual + doc-base
---
 debian/doc-base | 19 +++++++++++++++++++
 debian/docs     |  1 +
 debian/rules    |  3 +++
 3 files changed, 23 insertions(+)

diff --git a/debian/doc-base b/debian/doc-base
new file mode 100644
index 0000000..58d16fb
--- /dev/null
+++ b/debian/doc-base
@@ -0,0 +1,19 @@
+Document: jmodeltest
+Title: jModelTest manual
+Author: Diego Darriba, David Posada
+Abstract: HPC selection of models of nucleotide substitution
+ jModelTest is a tool to carry out statistical selection of best-fit
+ models of nucleotide substitution. It implements five different model
+ selection strategies: hierarchical and dynamical likelihood ratio tests
+ (hLRT and dLRT), Akaike and Bayesian information criteria (AIC and BIC),
+ and a decision theory method (DT). It also provides estimates of model
+ selection uncertainty, parameter importances and model-averaged
+ parameter estimates, including model-averaged tree topologies.
+ jModelTest 2 includes High Performance Computing (HPC) capabilities and
+ additional features like new strategies for tree optimization, model-
+ averaged phylogenetic trees (both topology and branch length), heuristic
+ filtering and automatic logging of user activity.
+Section: Science/Biology
+
+Format: pdf
+Files: /usr/share/doc/jmodeltest/manual.pdf
diff --git a/debian/docs b/debian/docs
index 9c57234..6557c88 100644
--- a/debian/docs
+++ b/debian/docs
@@ -1 +1,2 @@
 dist/README
+manual/manual.pdf
diff --git a/debian/rules b/debian/rules
index f873a76..b379f81 100755
--- a/debian/rules
+++ b/debian/rules
@@ -17,5 +17,8 @@ override_dh_auto_build:
 override_dh_installchangelogs:
 	dh_installchangelogs dist/CHANGELOG
 
+override_dh_compress:
+	dh_compress --exclude=.pdf
+
 get-orig-source:
 	uscan --verbose --force-download --repack --compression xz

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