[med-svn] [ensembl-test] 02/02: Initial packaging
Afif Elghraoui
afif at moszumanska.debian.org
Tue May 17 08:53:16 UTC 2016
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afif pushed a commit to branch master
in repository ensembl-test.
commit 38d921aa049e86a9de85248e6f72f6b01d97de3d
Author: Afif Elghraoui <afif at ghraoui.name>
Date: Tue May 17 01:28:24 2016 -0700
Initial packaging
---
debian/changelog | 5 ++++
debian/compat | 1 +
debian/control | 45 +++++++++++++++++++++++++++++++++
debian/copyright | 28 ++++++++++++++++++++
debian/ensembl-test.install | 1 +
debian/get-orig-source | 25 ++++++++++++++++++
debian/libbio-ensembl-test-perl.install | 1 +
debian/rules | 16 ++++++++++++
debian/source/format | 1 +
debian/watch | 3 +++
10 files changed, 126 insertions(+)
diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..2b6a79b
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+ensembl-test (84+20160225+0928-1) UNRELEASED; urgency=medium
+
+ * Initial release (Closes: #nnnn)
+
+ -- Afif Elghraoui <afif at ghraoui.name> Tue, 17 May 2016 01:27:04 -0700
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..3e5e8c9
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,45 @@
+Source: ensembl-test
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Afif Elghraoui <afif at debian.org>
+Build-Depends:
+ debhelper (>= 9),
+Standards-Version: 3.9.8
+Homepage: https://github.com/Ensembl/ensembl-test
+Vcs-Git: https://anonscm.debian.org/git/debian-med/ensembl-test.git
+Vcs-Browser: http://anonscm.debian.org/cgit/debian-med/ensembl-test.git
+
+Package: ensembl-test
+Architecture: all
+Depends:
+ ${misc:Depends},
+ ${perl:Depends},
+ libbio-ensembl-test-perl (= ${source:Version})
+Description: libraries and harnesses used for running the Ensembl test suite
+ <insert long description, indented with spaces>
+
+Package: libbio-ensembl-test-perl
+Section: perl
+Architecture: all
+Depends:
+ ${misc:Depends},
+ ${perl:Depends},
+ libdbi-perl,
+ libdbd-mysql-perl,
+# Instead of Test::More
+ libtest-most-perl,
+ libtest-warnings-perl,
+ libtest-mockobject-perl,
+# Not in Debian
+# libdevel-peek-perl,
+ libdevel-cycle-perl,
+ liberror-perl,
+ libpadwalker-perl,
+# For Test::Builder::Module
+ libtest-simple-perl,
+ libio-string-perl,
+# Not in Debian
+# libtest-ftp-server-perl,
+Description: Perl libraries for running the Ensembl test suite
+ <insert long description, indented with spaces>
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..0251435
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,28 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: ensembl-test
+Source: https://github.com/Ensembl/ensembl-test
+
+Files: *
+Copyright: 1999-2016 Wellcome Trust Sanger Institute
+ 1999-2016 EMBL-European Bioinformatics Institute
+License: Apache-2.0
+
+Files: debian/*
+Copyright: 2015-2016 Afif Elghraoui <afif at debian.org>
+License: Apache-2.0
+
+License: Apache-2.0
+ Licensed under the Apache License, Version 2.0 (the "License");
+ you may not use this file except in compliance with the License.
+ You may obtain a copy of the License at
+ .
+ http://www.apache.org/licenses/LICENSE-2.0
+ .
+ Unless required by applicable law or agreed to in writing, software
+ distributed under the License is distributed on an "AS IS" BASIS,
+ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ See the License for the specific language governing permissions and
+ limitations under the License.
+ .
+ On Debian systems, the complete text of the Apache version 2.0 license
+ can be found in "/usr/share/common-licenses/Apache-2.0".
diff --git a/debian/ensembl-test.install b/debian/ensembl-test.install
new file mode 100644
index 0000000..7c39a24
--- /dev/null
+++ b/debian/ensembl-test.install
@@ -0,0 +1 @@
+scripts usr/share/ensembl/test
diff --git a/debian/get-orig-source b/debian/get-orig-source
new file mode 100755
index 0000000..2839538
--- /dev/null
+++ b/debian/get-orig-source
@@ -0,0 +1,25 @@
+#!/bin/sh
+
+upstream_name=$(dpkg-parsechangelog -Ssource)
+current_version=$(dpkg-parsechangelog -Sversion | sed 's/-[^-]*$//')
+tmpdir=$(mktemp -d)
+dest=$PWD/..
+
+git clone --depth 1 $1 $tmpdir/$upstream_name
+
+cd $tmpdir/$upstream_name
+
+major_version=$(git rev-parse --abbrev-ref HEAD | grep -oP '\d*$')
+minor_version=$(date --utc \
+ --date "@$(git log -1 --format='%at')" \
+ +%Y%m%d+%H%M)
+
+upstream_version=$major_version+$minor_version
+
+if $(dpkg --compare-versions $current_version lt $upstream_version)
+then
+ git archive --prefix=$upstream_name/ HEAD \
+ | gzip > $dest/$upstream_name-$upstream_version.tar.gz
+fi
+
+rm -rf $tmpdir
diff --git a/debian/libbio-ensembl-test-perl.install b/debian/libbio-ensembl-test-perl.install
new file mode 100644
index 0000000..fa867bf
--- /dev/null
+++ b/debian/libbio-ensembl-test-perl.install
@@ -0,0 +1 @@
+modules/Bio usr/share/perl5
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..d2ee18c
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,16 @@
+#!/usr/bin/make -f
+
+#DH_VERBOSE = 1
+
+include /usr/share/dpkg/default.mk
+
+%:
+ dh $@
+
+override_dh_fixperms:
+ dh_fixperms
+ chmod -x debian/$(DEB_SOURCE)/usr/share/ensembl/test/scripts/README
+ chmod +x debian/$(DEB_SOURCE)/usr/share/ensembl/test/scripts/load_database.pl
+
+get-orig-source:
+ debian/get-orig-source 'https://github.com/Ensembl/ensembl-test'
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..3145520
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+
+# Upstream uses release branches as opposed to tags.
--
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