[med-svn] [last-align] 02/05: Merge tag 'upstream/737'

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository last-align.

commit 1846c3b75d042eeeed688472fff073b6ae236b48
Merge: d98829f e10f0c8
Author: Andreas Tille <tille at debian.org>
Date:   Wed May 18 18:06:59 2016 +0200

    Merge tag 'upstream/737'
    
    Upstream version 737

 ChangeLog.txt             |  43 +++++++++-
 doc/last-tuning.html      |  13 ++-
 doc/last-tuning.txt       |  14 +++-
 doc/lastal.html           | 151 ++++++++++++++++++++--------------
 doc/lastal.txt            | 137 ++++++++++++++++++-------------
 src/Alignment.cc          | 137 +++++++++++++++++++++----------
 src/Alignment.hh          |  21 +++--
 src/GreedyXdropAligner.cc | 203 ++++++++++++++++++++++++++++++++++++++++++++++
 src/GreedyXdropAligner.hh |  69 ++++++++++++++++
 src/LastEvaluer.cc        |  45 +++++++---
 src/LastEvaluer.hh        |   3 +-
 src/LastalArguments.cc    | 103 ++++++++++++++---------
 src/LastalArguments.hh    |   6 +-
 src/lastal.cc             |  68 +++++++++++-----
 src/makefile              |  25 +++---
 src/version.hh            |   2 +-
 16 files changed, 789 insertions(+), 251 deletions(-)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/last-align.git