[med-svn] [trimmomatic] 05/06: Adapt patches

[Andreas Tille]

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tille pushed a commit to branch master
in repository trimmomatic.

commit e660e1c1f730d1a1c72b750e6bf6ecf3938ae639
Author: Andreas Tille <tille at debian.org>
Date:   Thu May 19 13:46:41 2016 +0200

    Adapt patches
---
 debian/patches/buildxmlJbzip2.patch                  | 2 +-
 debian/patches/remove_jar_version.path               | 2 +-
 debian/patches/search_in_usr_share_trimmomatic.patch | 4 ++--
 3 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/debian/patches/buildxmlJbzip2.patch b/debian/patches/buildxmlJbzip2.patch
index e7a6cd5..8c62645 100644
--- a/debian/patches/buildxmlJbzip2.patch
+++ b/debian/patches/buildxmlJbzip2.patch
@@ -4,7 +4,7 @@ Description: Use Debian packaged bzip2 library
 --- a/build.xml
 +++ b/build.xml
 @@ -2,7 +2,7 @@
- 	<property name="version" value="0.35"/>
+ 	<property name="version" value="0.36"/>
  	
  	<property name="src" location="src" />
 -	<property name="lib" location="lib" />
diff --git a/debian/patches/remove_jar_version.path b/debian/patches/remove_jar_version.path
index 3524a8e..16cd159 100644
--- a/debian/patches/remove_jar_version.path
+++ b/debian/patches/remove_jar_version.path
@@ -5,7 +5,7 @@ Forwarded: no
 Last-Updated: 2013-08-08
 --- a/build.xml
 +++ b/build.xml
-@@ -63,7 +63,7 @@
+@@ -65,7 +65,7 @@
      		</fileset>
  		</copy>
  	
diff --git a/debian/patches/search_in_usr_share_trimmomatic.patch b/debian/patches/search_in_usr_share_trimmomatic.patch
index 4c80f52..252fca4 100644
--- a/debian/patches/search_in_usr_share_trimmomatic.patch
+++ b/debian/patches/search_in_usr_share_trimmomatic.patch
@@ -2,8 +2,8 @@ Author: Steffen Moeller <moeller at debian.org>
 Last-Update:   Wed Mar 2 14:16:37 2016 +0100
 Description: Trimmomatic shall find adapters by name
 
---- trimmomatic.orig/src/org/usadellab/trimmomatic/trim/IlluminaClippingTrimmer.java
-+++ trimmomatic/src/org/usadellab/trimmomatic/trim/IlluminaClippingTrimmer.java
+--- a/src/org/usadellab/trimmomatic/trim/IlluminaClippingTrimmer.java
++++ b/src/org/usadellab/trimmomatic/trim/IlluminaClippingTrimmer.java
 @@ -49,7 +49,20 @@ public class IlluminaClippingTrimmer imp
  	{
  		String arg[] = args.split(":");

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