[med-svn] [trimmomatic] branch upstream updated (56676b6 -> c39d405)

[Andreas Tille]

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tille pushed a change to branch upstream
in repository trimmomatic.

      from  56676b6   Imported Upstream version 0.35+dfsg
       new  c39d405   Imported Upstream version 0.36+dfsg

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
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Summary of changes:
 build.xml                                          |  4 +-
 src/org/usadellab/trimmomatic/Trimmomatic.java     | 33 ++++++++++--
 src/org/usadellab/trimmomatic/TrimmomaticPE.java   | 11 +++-
 src/org/usadellab/trimmomatic/TrimmomaticSE.java   |  9 +++-
 .../trimmomatic/trim/HeadCropTrimmer.java          | 26 +++++++--
 .../trimmomatic/trim/TailCropTrimmer.java          | 61 ++++++++++++++++++++++
 .../usadellab/trimmomatic/trim/TrimmerFactory.java |  3 ++
 .../trimmomatic/util/ConcatGZIPInputStream.java    | 51 ++----------------
 8 files changed, 137 insertions(+), 61 deletions(-)
 create mode 100644 src/org/usadellab/trimmomatic/trim/TailCropTrimmer.java

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