[med-svn] [r-cran-vegan] 02/05: Merge tag 'upstream/2.3-5'

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-cran-vegan.

commit 2349f2fceafbdc69f648af441f192c15db0e3864
Merge: fbf9355 ea8b48f
Author: Andreas Tille <tille at debian.org>
Date:   Thu May 19 23:20:03 2016 +0200

    Merge tag 'upstream/2.3-5'
    
    Upstream version 2.3-5

 DESCRIPTION                   |   15 +-
 MD5                           |  146 ++--
 NAMESPACE                     |    4 +-
 R/add1.cca.R                  |    2 +
 R/adonis.R                    |    7 +-
 R/anosim.R                    |    9 +-
 R/anova.cca.R                 |    2 +
 R/anova.ccalist.R             |    9 +-
 R/betadiver.R                 |    2 +-
 R/bioenv.default.R            |    4 +-
 R/calibrate.cca.R             |    2 +-
 R/capscale.R                  |    4 +
 R/drop1.cca.R                 |    2 +
 R/eigenvals.R                 |   13 +-
 R/estaccumR.R                 |    2 +-
 R/gdispweight.R               |    1 +
 R/howHead.R                   |    4 +-
 R/lines.procrustes.R          |   13 +-
 R/linestack.R                 |    9 +-
 R/metaMDS.R                   |    8 +-
 R/mrpp.R                      |    4 +-
 R/mso.R                       |    9 +-
 R/ordiArgAbsorber.R           |    2 +-
 R/ordiR2step.R                |    2 +
 R/ordiareatest.R              |    4 +-
 R/ordicluster.R               |   11 +-
 R/ordiellipse.R               |    2 +-
 R/ordistep.R                  |    2 +
 R/points.procrustes.R         |   22 +-
 R/rarefy.R                    |   19 +-
 R/renyiaccum.R                |    1 +
 R/rrarefy.R                   |   16 +-
 R/simper.R                    |    4 +-
 R/specpool.R                  |   23 +-
 R/treedist.R                  |    5 +
 R/treedive.R                  |    6 +-
 R/treeheight.R                |   23 +-
 R/tsallisaccum.R              |    1 +
 R/vegandocs.R                 |   37 +-
 R/vegdist.R                   |    4 +-
 R/zzz.R                       |    2 +-
 build/vignette.rds            |  Bin 288 -> 347 bytes
 inst/NEWS.Rd                  |  172 +++++
 inst/doc/FAQ-vegan.R          |    6 +
 inst/doc/FAQ-vegan.Rmd        |  700 ++++++++++++++++++
 inst/doc/FAQ-vegan.html       |  911 +++++++++++++++++++++++
 inst/doc/FAQ-vegan.pdf        |  Bin 148353 -> 0 bytes
 inst/doc/NEWS.html            | 1633 -----------------------------------------
 inst/doc/decision-vegan.Rnw   |    2 +-
 inst/doc/decision-vegan.pdf   |  Bin 342248 -> 342272 bytes
 inst/doc/diversity-vegan.pdf  |  Bin 365321 -> 365179 bytes
 inst/doc/intro-vegan.pdf      |  Bin 234771 -> 234604 bytes
 inst/doc/partitioning.R       |   34 +
 inst/doc/partitioning.Rnw     |   80 ++
 inst/doc/partitioning.pdf     |  Bin 62541 -> 137301 bytes
 man/cca.Rd                    |   23 +-
 man/clamtest.Rd               |    2 +-
 man/diversity.Rd              |   12 +-
 man/mso.Rd                    |   13 +-
 man/nestedtemp.Rd             |    2 +-
 man/oecosimu.Rd               |    3 +-
 man/plot.cca.Rd               |   10 +-
 man/procrustes.Rd             |   12 +-
 man/rarefy.Rd                 |   25 +-
 man/simper.Rd                 |    4 +-
 man/specpool.Rd               |   23 +-
 man/varpart.Rd                |   28 +-
 man/vegan-internal.Rd         |    2 +-
 man/vegan-package.Rd          |   35 +-
 man/vegandocs.Rd              |   85 +--
 src/monoMDS.f                 |   12 +-
 vignettes/.install_extras     |    2 -
 vignettes/FAQ-vegan.Rmd       |  700 ++++++++++++++++++
 vignettes/FAQ-vegan.pdf       |  Bin 148353 -> 0 bytes
 vignettes/FAQ-vegan.texi      |  829 ---------------------
 vignettes/Makefile            |   15 -
 vignettes/NEWS.html           | 1633 -----------------------------------------
 vignettes/decision-vegan.Rnw  |    2 +-
 vignettes/decision-vegan.tex  |  817 ---------------------
 vignettes/diversity-vegan.tex |  964 ------------------------
 vignettes/intro-vegan.tex     |  620 ----------------
 vignettes/partitioning.Rnw    |   80 ++
 vignettes/varpart23.pdf       |  Bin 0 -> 28057 bytes
 vignettes/varpart4.pdf        |  Bin 0 -> 28442 bytes
 84 files changed, 3078 insertions(+), 6870 deletions(-)

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