[med-svn] [r-cran-vegan] branch upstream updated (8fe98ea -> ea8b48f)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch upstream
in repository r-cran-vegan.

      from  8fe98ea   Imported Upstream version 2.3-1
       new  ea8b48f   Imported Upstream version 2.3-5

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION                   |   15 +-
 MD5                           |  146 ++--
 NAMESPACE                     |    4 +-
 R/add1.cca.R                  |    2 +
 R/adonis.R                    |    7 +-
 R/anosim.R                    |    9 +-
 R/anova.cca.R                 |    2 +
 R/anova.ccalist.R             |    9 +-
 R/betadiver.R                 |    2 +-
 R/bioenv.default.R            |    4 +-
 R/calibrate.cca.R             |    2 +-
 R/capscale.R                  |    4 +
 R/drop1.cca.R                 |    2 +
 R/eigenvals.R                 |   13 +-
 R/estaccumR.R                 |    2 +-
 R/gdispweight.R               |    1 +
 R/howHead.R                   |    4 +-
 R/lines.procrustes.R          |   13 +-
 R/linestack.R                 |    9 +-
 R/metaMDS.R                   |    8 +-
 R/mrpp.R                      |    4 +-
 R/mso.R                       |    9 +-
 R/ordiArgAbsorber.R           |    2 +-
 R/ordiR2step.R                |    2 +
 R/ordiareatest.R              |    4 +-
 R/ordicluster.R               |   11 +-
 R/ordiellipse.R               |    2 +-
 R/ordistep.R                  |    2 +
 R/points.procrustes.R         |   22 +-
 R/rarefy.R                    |   19 +-
 R/renyiaccum.R                |    1 +
 R/rrarefy.R                   |   16 +-
 R/simper.R                    |    4 +-
 R/specpool.R                  |   23 +-
 R/treedist.R                  |    5 +
 R/treedive.R                  |    6 +-
 R/treeheight.R                |   23 +-
 R/tsallisaccum.R              |    1 +
 R/vegandocs.R                 |   37 +-
 R/vegdist.R                   |    4 +-
 R/zzz.R                       |    2 +-
 build/vignette.rds            |  Bin 288 -> 347 bytes
 inst/NEWS.Rd                  |  172 +++++
 inst/doc/FAQ-vegan.R          |    6 +
 inst/doc/FAQ-vegan.Rmd        |  700 ++++++++++++++++++
 inst/doc/FAQ-vegan.html       |  911 +++++++++++++++++++++++
 inst/doc/FAQ-vegan.pdf        |  Bin 148353 -> 0 bytes
 inst/doc/NEWS.html            | 1633 -----------------------------------------
 inst/doc/decision-vegan.Rnw   |    2 +-
 inst/doc/decision-vegan.pdf   |  Bin 342248 -> 342272 bytes
 inst/doc/diversity-vegan.pdf  |  Bin 365321 -> 365179 bytes
 inst/doc/intro-vegan.pdf      |  Bin 234771 -> 234604 bytes
 inst/doc/partitioning.R       |   34 +
 inst/doc/partitioning.Rnw     |   80 ++
 inst/doc/partitioning.pdf     |  Bin 62541 -> 137301 bytes
 man/cca.Rd                    |   23 +-
 man/clamtest.Rd               |    2 +-
 man/diversity.Rd              |   12 +-
 man/mso.Rd                    |   13 +-
 man/nestedtemp.Rd             |    2 +-
 man/oecosimu.Rd               |    3 +-
 man/plot.cca.Rd               |   10 +-
 man/procrustes.Rd             |   12 +-
 man/rarefy.Rd                 |   25 +-
 man/simper.Rd                 |    4 +-
 man/specpool.Rd               |   23 +-
 man/varpart.Rd                |   28 +-
 man/vegan-internal.Rd         |    2 +-
 man/vegan-package.Rd          |   35 +-
 man/vegandocs.Rd              |   85 +--
 src/monoMDS.f                 |   12 +-
 vignettes/.install_extras     |    2 -
 vignettes/FAQ-vegan.Rmd       |  700 ++++++++++++++++++
 vignettes/FAQ-vegan.pdf       |  Bin 148353 -> 0 bytes
 vignettes/FAQ-vegan.texi      |  829 ---------------------
 vignettes/Makefile            |   15 -
 vignettes/NEWS.html           | 1633 -----------------------------------------
 vignettes/decision-vegan.Rnw  |    2 +-
 vignettes/decision-vegan.tex  |  817 ---------------------
 vignettes/diversity-vegan.tex |  964 ------------------------
 vignettes/intro-vegan.tex     |  620 ----------------
 vignettes/partitioning.Rnw    |   80 ++
 vignettes/varpart23.pdf       |  Bin 0 -> 28057 bytes
 vignettes/varpart4.pdf        |  Bin 0 -> 28442 bytes
 84 files changed, 3078 insertions(+), 6870 deletions(-)
 create mode 100644 inst/doc/FAQ-vegan.R
 create mode 100644 inst/doc/FAQ-vegan.Rmd
 create mode 100644 inst/doc/FAQ-vegan.html
 delete mode 100644 inst/doc/FAQ-vegan.pdf
 delete mode 100644 inst/doc/NEWS.html
 create mode 100644 inst/doc/partitioning.R
 create mode 100644 inst/doc/partitioning.Rnw
 delete mode 100644 vignettes/.install_extras
 create mode 100644 vignettes/FAQ-vegan.Rmd
 delete mode 100644 vignettes/FAQ-vegan.pdf
 delete mode 100644 vignettes/FAQ-vegan.texi
 delete mode 100644 vignettes/Makefile
 delete mode 100644 vignettes/NEWS.html
 delete mode 100644 vignettes/decision-vegan.tex
 delete mode 100644 vignettes/diversity-vegan.tex
 delete mode 100644 vignettes/intro-vegan.tex
 create mode 100644 vignettes/partitioning.Rnw
 create mode 100644 vignettes/varpart23.pdf
 create mode 100644 vignettes/varpart4.pdf

-- 
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