[med-svn] [transdecoder] 02/02: new upstream release

[Michael Crusoe]

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misterc-guest pushed a commit to tag debian/3.0.0+dfsg-1
in repository transdecoder.

commit 9d034cbc30ba2fab1d73bf283e0d5937c0b2fbeb
Author: Michael R. Crusoe <crusoe at ucdavis.edu>
Date:   Wed May 18 02:32:11 2016 -0700

    new upstream release
---
 debian/changelog                              | 6 ++++++
 debian/patches/cd-hit-est-rename              | 2 +-
 debian/patches/reproducible-sample_data.patch | 2 +-
 debian/transdecoder-doc.lintian-overrides     | 3 ++-
 4 files changed, 10 insertions(+), 3 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 168f57e..1e78d51 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+transdecoder (3.0.0+dfsg-1) unstable; urgency=medium
+
+  * new upstream release
+
+ -- Michael R. Crusoe <michael.crusoe at gmail.com>  Wed, 18 May 2016 03:03:30 -0700
+
 transdecoder (2.1.0+dfsg-1) unstable; urgency=medium
 
   * New upstream release
diff --git a/debian/patches/cd-hit-est-rename b/debian/patches/cd-hit-est-rename
index 118ca55..8a276f1 100644
--- a/debian/patches/cd-hit-est-rename
+++ b/debian/patches/cd-hit-est-rename
@@ -4,7 +4,7 @@ Description: Fix path to Debian location of cd-hit-est
 
 --- transdecoder.orig/TransDecoder.Predict
 +++ transdecoder/TransDecoder.Predict
-@@ -58,7 +58,7 @@
+@@ -62,7 +62,7 @@
  $ENV{PATH} = "$UTIL_DIR/bin:$ENV{PATH}";
  
  
diff --git a/debian/patches/reproducible-sample_data.patch b/debian/patches/reproducible-sample_data.patch
index 4fc44ea..07cddf8 100644
--- a/debian/patches/reproducible-sample_data.patch
+++ b/debian/patches/reproducible-sample_data.patch
@@ -5,7 +5,7 @@ Author: Eduard Sanou <dhole at openmailbox.org>
 Forwarded: https://github.com/TransDecoder/TransDecoder/pull/20
 --- transdecoder.orig/sample_data/cufflinks_example/runMe.sh
 +++ transdecoder/sample_data/cufflinks_example/runMe.sh
-@@ -25,7 +25,7 @@
+@@ -24,7 +24,7 @@
  ../../util/cufflinks_gtf_to_alignment_gff3.pl transcripts.gtf > transcripts.gff3
  
  ## generate transcripts fasta file
diff --git a/debian/transdecoder-doc.lintian-overrides b/debian/transdecoder-doc.lintian-overrides
index 1c50223..5d28834 100644
--- a/debian/transdecoder-doc.lintian-overrides
+++ b/debian/transdecoder-doc.lintian-overrides
@@ -19,4 +19,5 @@ transdecoder-doc: package-contains-timestamped-gzip usr/lib/transdecoder/sample_
 transdecoder-doc: duplicated-compressed-file usr/lib/transdecoder/sample_data/pasa_example/pasa_assemblies.gff3.gz
 transdecoder-doc: package-contains-timestamped-gzip usr/lib/transdecoder/sample_data/simple_transcriptome_target/Trinity.fasta.gz
 transdecoder-doc: duplicated-compressed-file usr/lib/transdecoder/sample_data/simple_transcriptome_target/Trinity.fasta.gz
-
+transdecoder-doc: package-contains-timestamped-gzip usr/lib/transdecoder/sample_data/cufflinks_example/blastp.outfmt6.gz
+transdecoder-doc: package-contains-timestamped-gzip usr/lib/transdecoder/sample_data/pasa_example/pasa_assemblies_described.txt.gz

-- 
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