[med-svn] [rsat] branch master updated (57737aa -> 71a5a56)
Andreas Tille
tille at debian.org
Fri May 20 10:00:47 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository rsat.
from 57737aa Remove some unneeded files add some JS-packages to replace third party JS scripts in source code
new 8afaf3f Imported Upstream version 2016-03-14+dfsg
new 71a5a56 Merge tag 'upstream/2016-03-14+dfsg'
The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
contrib/REA/Makefile | 46 -
contrib/REA/REA | Bin 23207 -> 0 bytes
contrib/REA/REA.c | 459 -
contrib/REA/REA.h | 114 -
contrib/REA/REA.tgz | Bin 13223 -> 0 bytes
contrib/REA/README | 340 -
contrib/REA/chronometer.c | 128 -
contrib/REA/chronometer.h | 95 -
contrib/REA/dijkstra.c | 252 -
contrib/REA/dijkstra.h | 50 -
contrib/REA/loadgraph.c | 237 -
contrib/REA/loadgraph.h | 52 -
.../compare-matrices-quick/compare-matrices-quick | Bin 22340 -> 0 bytes
contrib/kwalks/README.txt | 146 -
contrib/kwalks/bin/dot2demo | 1 -
contrib/kwalks/bin/extractedInfo | 1 -
contrib/kwalks/bin/genK | 1 -
contrib/kwalks/bin/gen_connected | 1 -
...sCaller_3c39c264-6da6-451d-87e5-094d156aeda8.sh | 3 -
...sCaller_3df79f4c-2acb-4f41-9824-f9a9cfd4ed3a.sh | 3 -
...sCaller_4c363bf3-53f1-4d46-ace5-ea6a253e0454.sh | 3 -
...sCaller_65d77cba-6f26-4658-b469-b210fc2440c5.sh | 3 -
...sCaller_8fe943ae-706c-4368-8817-a4b4a5d78c49.sh | 3 -
...sCaller_977bd0ad-8cd2-4b2f-afc7-1a984f865af8.sh | 3 -
...sCaller_ba4a238c-248b-4342-a125-4cbcb199e92a.sh | 3 -
contrib/kwalks/bin/kw_comp | 1 -
contrib/kwalks/bin/kwalk | 1 -
contrib/kwalks/bin/lkwalk | Bin 41091 -> 0 bytes
contrib/kwalks/bin/spb2spw | 1 -
contrib/kwalks/examples/MetaCyc_directed.walks | 22241 -------------------
contrib/kwalks/examples/big_test.sh | 3 -
contrib/kwalks/examples/graph100_gen | 101 -
contrib/kwalks/examples/graph10_bin_sp | 11 -
contrib/kwalks/examples/graph10_sym_sp | 11 -
contrib/kwalks/examples/graph2000_gen | 2001 --
contrib/kwalks/examples/kegg18298 | 18298 ---------------
contrib/kwalks/examples/kegg7695 | 7696 -------
contrib/kwalks/examples/paper_roadmap_example | 12 -
.../kwalks/examples/paper_roadmap_example_iter1 | 12 -
contrib/kwalks/examples/small_test.sh | 3 -
contrib/kwalks/gpl-3.0.txt | 674 -
contrib/kwalks/matlab/extractedInfo.m | 96 -
contrib/kwalks/matlab/isConnex.m | 49 -
contrib/kwalks/matlab/isSymmetric.m | 19 -
contrib/kwalks/matlab/kwalk.m | 64 -
contrib/kwalks/matlab/readMat_sparse.m | 43 -
contrib/kwalks/matlab/stochMat.m | 7 -
contrib/kwalks/matlab/writeMat.m | 27 -
contrib/kwalks/matlab/writeMat_sparse.m | 32 -
contrib/kwalks/matlab/writeVec.m | 20 -
contrib/kwalks/scripts/dot2demo | 132 -
contrib/kwalks/scripts/extractedInfo | 146 -
contrib/kwalks/scripts/genK | 24 -
contrib/kwalks/scripts/gen_connected | 85 -
contrib/kwalks/scripts/kw_comp | 123 -
contrib/kwalks/scripts/kwalk | 105 -
contrib/kwalks/scripts/spb2spw | 27 -
contrib/kwalks/src/Makefile | 21 -
contrib/kwalks/src/lkwalk.c | 475 -
contrib/kwalks/src/tools.c | 1375 --
contrib/kwalks/src/tools.h | 285 -
doc/manuals/RSAT_install_guide.pdf | Bin 624962 -> 0 bytes
doc/manuals/neat_tutorial.pdf | Bin 400167 -> 0 bytes
doc/manuals/tutorial_shell_rsat.pdf | Bin 1157697 -> 0 bytes
64 files changed, 56165 deletions(-)
delete mode 100644 contrib/REA/Makefile
delete mode 100755 contrib/REA/REA
delete mode 100644 contrib/REA/REA.c
delete mode 100644 contrib/REA/REA.h
delete mode 100644 contrib/REA/REA.tgz
delete mode 100644 contrib/REA/README
delete mode 100644 contrib/REA/chronometer.c
delete mode 100644 contrib/REA/chronometer.h
delete mode 100644 contrib/REA/dijkstra.c
delete mode 100644 contrib/REA/dijkstra.h
delete mode 100644 contrib/REA/loadgraph.c
delete mode 100644 contrib/REA/loadgraph.h
delete mode 100755 contrib/compare-matrices-quick/compare-matrices-quick
delete mode 100755 contrib/kwalks/README.txt
delete mode 120000 contrib/kwalks/bin/dot2demo
delete mode 120000 contrib/kwalks/bin/extractedInfo
delete mode 120000 contrib/kwalks/bin/genK
delete mode 120000 contrib/kwalks/bin/gen_connected
delete mode 100755 contrib/kwalks/bin/kWalksCaller_3c39c264-6da6-451d-87e5-094d156aeda8.sh
delete mode 100755 contrib/kwalks/bin/kWalksCaller_3df79f4c-2acb-4f41-9824-f9a9cfd4ed3a.sh
delete mode 100755 contrib/kwalks/bin/kWalksCaller_4c363bf3-53f1-4d46-ace5-ea6a253e0454.sh
delete mode 100755 contrib/kwalks/bin/kWalksCaller_65d77cba-6f26-4658-b469-b210fc2440c5.sh
delete mode 100755 contrib/kwalks/bin/kWalksCaller_8fe943ae-706c-4368-8817-a4b4a5d78c49.sh
delete mode 100755 contrib/kwalks/bin/kWalksCaller_977bd0ad-8cd2-4b2f-afc7-1a984f865af8.sh
delete mode 100755 contrib/kwalks/bin/kWalksCaller_ba4a238c-248b-4342-a125-4cbcb199e92a.sh
delete mode 120000 contrib/kwalks/bin/kw_comp
delete mode 120000 contrib/kwalks/bin/kwalk
delete mode 100755 contrib/kwalks/bin/lkwalk
delete mode 120000 contrib/kwalks/bin/spb2spw
delete mode 100644 contrib/kwalks/examples/MetaCyc_directed.walks
delete mode 100755 contrib/kwalks/examples/big_test.sh
delete mode 100644 contrib/kwalks/examples/graph100_gen
delete mode 100644 contrib/kwalks/examples/graph10_bin_sp
delete mode 100644 contrib/kwalks/examples/graph10_sym_sp
delete mode 100644 contrib/kwalks/examples/graph2000_gen
delete mode 100644 contrib/kwalks/examples/kegg18298
delete mode 100644 contrib/kwalks/examples/kegg7695
delete mode 100644 contrib/kwalks/examples/paper_roadmap_example
delete mode 100644 contrib/kwalks/examples/paper_roadmap_example_iter1
delete mode 100755 contrib/kwalks/examples/small_test.sh
delete mode 100755 contrib/kwalks/gpl-3.0.txt
delete mode 100755 contrib/kwalks/matlab/extractedInfo.m
delete mode 100755 contrib/kwalks/matlab/isConnex.m
delete mode 100755 contrib/kwalks/matlab/isSymmetric.m
delete mode 100755 contrib/kwalks/matlab/kwalk.m
delete mode 100755 contrib/kwalks/matlab/readMat_sparse.m
delete mode 100755 contrib/kwalks/matlab/stochMat.m
delete mode 100755 contrib/kwalks/matlab/writeMat.m
delete mode 100755 contrib/kwalks/matlab/writeMat_sparse.m
delete mode 100755 contrib/kwalks/matlab/writeVec.m
delete mode 100755 contrib/kwalks/scripts/dot2demo
delete mode 100755 contrib/kwalks/scripts/extractedInfo
delete mode 100755 contrib/kwalks/scripts/genK
delete mode 100755 contrib/kwalks/scripts/gen_connected
delete mode 100755 contrib/kwalks/scripts/kw_comp
delete mode 100755 contrib/kwalks/scripts/kwalk
delete mode 100755 contrib/kwalks/scripts/spb2spw
delete mode 100755 contrib/kwalks/src/Makefile
delete mode 100755 contrib/kwalks/src/lkwalk.c
delete mode 100755 contrib/kwalks/src/tools.c
delete mode 100755 contrib/kwalks/src/tools.h
delete mode 100644 doc/manuals/RSAT_install_guide.pdf
delete mode 100644 doc/manuals/neat_tutorial.pdf
delete mode 100644 doc/manuals/tutorial_shell_rsat.pdf
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