[med-svn] [rsat] 02/02: Merge tag 'upstream/2016-03-14+dfsg'

[Andreas Tille]

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tille pushed a commit to branch master
in repository rsat.

commit 71a5a56a514c76b73296cb971244d2daa25d11ef
Merge: 57737aa 8afaf3f
Author: Andreas Tille <tille at debian.org>
Date:   Fri May 20 11:57:34 2016 +0200

    Merge tag 'upstream/2016-03-14+dfsg'
    
    Upstream version 2016-03-14+dfsg

 contrib/REA/Makefile                               |    46 -
 contrib/REA/REA                                    |   Bin 23207 -> 0 bytes
 contrib/REA/REA.c                                  |   459 -
 contrib/REA/REA.h                                  |   114 -
 contrib/REA/REA.tgz                                |   Bin 13223 -> 0 bytes
 contrib/REA/README                                 |   340 -
 contrib/REA/chronometer.c                          |   128 -
 contrib/REA/chronometer.h                          |    95 -
 contrib/REA/dijkstra.c                             |   252 -
 contrib/REA/dijkstra.h                             |    50 -
 contrib/REA/loadgraph.c                            |   237 -
 contrib/REA/loadgraph.h                            |    52 -
 .../compare-matrices-quick/compare-matrices-quick  |   Bin 22340 -> 0 bytes
 contrib/kwalks/README.txt                          |   146 -
 contrib/kwalks/bin/dot2demo                        |     1 -
 contrib/kwalks/bin/extractedInfo                   |     1 -
 contrib/kwalks/bin/genK                            |     1 -
 contrib/kwalks/bin/gen_connected                   |     1 -
 ...sCaller_3c39c264-6da6-451d-87e5-094d156aeda8.sh |     3 -
 ...sCaller_3df79f4c-2acb-4f41-9824-f9a9cfd4ed3a.sh |     3 -
 ...sCaller_4c363bf3-53f1-4d46-ace5-ea6a253e0454.sh |     3 -
 ...sCaller_65d77cba-6f26-4658-b469-b210fc2440c5.sh |     3 -
 ...sCaller_8fe943ae-706c-4368-8817-a4b4a5d78c49.sh |     3 -
 ...sCaller_977bd0ad-8cd2-4b2f-afc7-1a984f865af8.sh |     3 -
 ...sCaller_ba4a238c-248b-4342-a125-4cbcb199e92a.sh |     3 -
 contrib/kwalks/bin/kw_comp                         |     1 -
 contrib/kwalks/bin/kwalk                           |     1 -
 contrib/kwalks/bin/lkwalk                          |   Bin 41091 -> 0 bytes
 contrib/kwalks/bin/spb2spw                         |     1 -
 contrib/kwalks/examples/MetaCyc_directed.walks     | 22241 -------------------
 contrib/kwalks/examples/big_test.sh                |     3 -
 contrib/kwalks/examples/graph100_gen               |   101 -
 contrib/kwalks/examples/graph10_bin_sp             |    11 -
 contrib/kwalks/examples/graph10_sym_sp             |    11 -
 contrib/kwalks/examples/graph2000_gen              |  2001 --
 contrib/kwalks/examples/kegg18298                  | 18298 ---------------
 contrib/kwalks/examples/kegg7695                   |  7696 -------
 contrib/kwalks/examples/paper_roadmap_example      |    12 -
 .../kwalks/examples/paper_roadmap_example_iter1    |    12 -
 contrib/kwalks/examples/small_test.sh              |     3 -
 contrib/kwalks/gpl-3.0.txt                         |   674 -
 contrib/kwalks/matlab/extractedInfo.m              |    96 -
 contrib/kwalks/matlab/isConnex.m                   |    49 -
 contrib/kwalks/matlab/isSymmetric.m                |    19 -
 contrib/kwalks/matlab/kwalk.m                      |    64 -
 contrib/kwalks/matlab/readMat_sparse.m             |    43 -
 contrib/kwalks/matlab/stochMat.m                   |     7 -
 contrib/kwalks/matlab/writeMat.m                   |    27 -
 contrib/kwalks/matlab/writeMat_sparse.m            |    32 -
 contrib/kwalks/matlab/writeVec.m                   |    20 -
 contrib/kwalks/scripts/dot2demo                    |   132 -
 contrib/kwalks/scripts/extractedInfo               |   146 -
 contrib/kwalks/scripts/genK                        |    24 -
 contrib/kwalks/scripts/gen_connected               |    85 -
 contrib/kwalks/scripts/kw_comp                     |   123 -
 contrib/kwalks/scripts/kwalk                       |   105 -
 contrib/kwalks/scripts/spb2spw                     |    27 -
 contrib/kwalks/src/Makefile                        |    21 -
 contrib/kwalks/src/lkwalk.c                        |   475 -
 contrib/kwalks/src/tools.c                         |  1375 --
 contrib/kwalks/src/tools.h                         |   285 -
 doc/manuals/RSAT_install_guide.pdf                 |   Bin 624962 -> 0 bytes
 doc/manuals/neat_tutorial.pdf                      |   Bin 400167 -> 0 bytes
 doc/manuals/tutorial_shell_rsat.pdf                |   Bin 1157697 -> 0 bytes
 64 files changed, 56165 deletions(-)

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