[med-svn] [andi] branch upstream updated (8ce73df -> dad0e7a)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch upstream
in repository andi.

      from  8ce73df   Imported Upstream version 0.9.6.1
       new  dad0e7a   Imported Upstream version 0.10

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .travis.yml                 |  27 ++++++----
 README.md                   |  51 ++++++++++++-------
 andi-manual.pdf             | Bin 425545 -> 440783 bytes
 configure.ac                |   6 ++-
 docs/andi.1.in              |   8 +--
 docs/manual/andi-manual.tex | 105 +++++++++++++++++++++++++++++++-------
 docs/manual/references.bib  |  16 +++++-
 opt/strchrnul.c             |   2 +
 scripts/failed.zsh          |  20 ++++++++
 src/Makefile.am             |   1 +
 src/andi.c                  |  69 +++++++++++++++++++------
 src/dist_hack.h             |  13 ++---
 src/esa.c                   | 121 ++++++++++++++++++++------------------------
 src/esa.h                   |   3 +-
 src/global.h                |  13 +++++
 src/io.c                    |  31 +++++++-----
 src/model.c                 |  32 ++++++++----
 src/process.c               |  57 +++++++--------------
 src/process.h               |   2 +-
 src/sequence.c              |  46 +++++------------
 src/sequence.h              |  21 +++++---
 test/test_esa.c             |  13 ++---
 test/test_seq.c             |  27 ++++++----
 23 files changed, 425 insertions(+), 259 deletions(-)
 create mode 100755 scripts/failed.zsh

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