[med-svn] [andi] branch master updated (7fa2463 -> 3ba5e8b)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository andi.

      from  7fa2463   Bumped standards version
       new  37d2bab   Imported Upstream version 0.10
       new  0b719b2   New upstream version
       new  1e9d001   Merge (unfortunately missed to git pull first)
       new  3ba5e8b   Better hardening and upload to unstable

The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .travis.yml                 |  27 ++++++----
 README.md                   |  51 ++++++++++++-------
 andi-manual.pdf             | Bin 425545 -> 440783 bytes
 configure.ac                |   6 ++-
 debian/changelog            |  10 ++--
 debian/control              |  21 +++++---
 debian/rules                |   2 +
 docs/andi.1.in              |   8 +--
 docs/manual/andi-manual.tex | 105 +++++++++++++++++++++++++++++++-------
 docs/manual/references.bib  |  16 +++++-
 opt/strchrnul.c             |   2 +
 scripts/failed.zsh          |  20 ++++++++
 src/Makefile.am             |   1 +
 src/andi.c                  |  69 +++++++++++++++++++------
 src/dist_hack.h             |  13 ++---
 src/esa.c                   | 121 ++++++++++++++++++++------------------------
 src/esa.h                   |   3 +-
 src/global.h                |  13 +++++
 src/io.c                    |  31 +++++++-----
 src/model.c                 |  32 ++++++++----
 src/process.c               |  57 +++++++--------------
 src/process.h               |   2 +-
 src/sequence.c              |  46 +++++------------
 src/sequence.h              |  21 +++++---
 test/test_esa.c             |  13 ++---
 test/test_seq.c             |  27 ++++++----
 26 files changed, 447 insertions(+), 270 deletions(-)
 create mode 100755 scripts/failed.zsh

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