[med-svn] r22002 - trunk/packages/smalt/trunk/debian

[Sascha Steinbiss]

Author: sascha-guest
Date: 2016-05-21 11:49:45 +0000 (Sat, 21 May 2016)
New Revision: 22002

Added:
   trunk/packages/smalt/trunk/debian/smalt-examples.lintian-overrides
Modified:
   trunk/packages/smalt/trunk/debian/changelog
   trunk/packages/smalt/trunk/debian/control
   trunk/packages/smalt/trunk/debian/rules
Log:
make reproducible, hardening, housekeeping


Modified: trunk/packages/smalt/trunk/debian/changelog
===================================================================
--- trunk/packages/smalt/trunk/debian/changelog	2016-05-20 22:00:40 UTC (rev 22001)
+++ trunk/packages/smalt/trunk/debian/changelog	2016-05-21 11:49:45 UTC (rev 22002)
@@ -1,3 +1,17 @@
+smalt (0.7.6-5) unstable; urgency=medium
+
+  * Team upload.
+  * Make build reproducible.
+    - set CONFIG_SHELL to fixed /bin/bash.
+  * Bump Standards-Version.
+  * Update Homepage entry.
+  * Reword long package description.
+  * Use secure Vcs-Browser.
+  * Add Lintian overrides for timestamped example gzips.
+  * Enable full hardening.
+
+ -- Sascha Steinbiss <sascha at steinbiss.name>  Sat, 21 May 2016 11:05:08 +0000
+
 smalt (0.7.6-4) unstable; urgency=medium
 
   * cme fix dpkg-control

Modified: trunk/packages/smalt/trunk/debian/control
===================================================================
--- trunk/packages/smalt/trunk/debian/control	2016-05-20 22:00:40 UTC (rev 22001)
+++ trunk/packages/smalt/trunk/debian/control	2016-05-21 11:49:45 UTC (rev 22002)
@@ -10,10 +10,10 @@
                samtools,
                libbambamc-dev,
                autotools-dev
-Standards-Version: 3.9.6
-Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/smalt/trunk/
+Standards-Version: 3.9.8
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/smalt/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/smalt/trunk/
-Homepage: http://www.sanger.ac.uk/resources/software/smalt/
+Homepage: http://www.sanger.ac.uk/science/tools/smalt-0
 
 Package: smalt
 Architecture: any
@@ -21,7 +21,7 @@
          ${misc:Depends}
 Description: Sequence Mapping and Alignment Tool
  SMALT efficiently aligns DNA sequencing reads with a reference genome.
- It Reads from a wide range of sequencing platforms, for example Illumina,
+ Reads from a wide range of sequencing platforms, for example Illumina,
  Roche-454, Ion Torrent, PacBio or ABI-Sanger, can be processed including
  paired reads.
  .
@@ -47,7 +47,7 @@
          ${misc:Depends}
 Description: Sequence Mapping and Alignment Tool (examples)
  SMALT efficiently aligns DNA sequencing reads with a reference genome.
- It Reads from a wide range of sequencing platforms, for example Illumina,
+ Reads from a wide range of sequencing platforms, for example Illumina,
  Roche-454, Ion Torrent, PacBio or ABI-Sanger, can be processed including
  paired reads.
  .

Modified: trunk/packages/smalt/trunk/debian/rules
===================================================================
--- trunk/packages/smalt/trunk/debian/rules	2016-05-20 22:00:40 UTC (rev 22001)
+++ trunk/packages/smalt/trunk/debian/rules	2016-05-21 11:49:45 UTC (rev 22002)
@@ -1,11 +1,16 @@
 #!/usr/bin/make -f
 
 # DH_VERBOSE := 1
+export DEB_BUILD_MAINT_OPTIONS = hardening=+all
 
 # autoreconf is needed to make the patch to test/Makefile.am effective
 %:
 	dh $@ --with autotools_dev # this fails because auf broken upstream autoconf stuff: - - with autoreconf
 
+override_dh_auto_configure:
+	# see upstream INSTALL file
+	CONFIG_SHELL=/bin/bash /bin/bash ./configure CONFIG_SHELL=/bin/bash
+
 override_dh_auto_install:
 	# upstream install does install more files than needed
 

Added: trunk/packages/smalt/trunk/debian/smalt-examples.lintian-overrides
===================================================================
--- trunk/packages/smalt/trunk/debian/smalt-examples.lintian-overrides	                        (rev 0)
+++ trunk/packages/smalt/trunk/debian/smalt-examples.lintian-overrides	2016-05-21 11:49:45 UTC (rev 22002)
@@ -0,0 +1,2 @@
+# these are provided by upstream
+smalt-examples: package-contains-timestamped-gzip *