[med-svn] [bowtie2] annotated tag debian/2.2.9-2 created (now 507e68d)

Sascha Steinbiss sascha at steinbiss.name
Thu May 26 11:00:03 UTC 2016


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sascha-guest pushed a change to annotated tag debian/2.2.9-2
in repository bowtie2.

        at  507e68d   (tag)
   tagging  7c34d9265deeb50fb8e29053fbe633eaa37bccf0 (commit)
  replaces  upstream/2.2.8
 tagged by  Sascha Steinbiss
        on  Thu May 26 10:59:40 2016 +0000

- Log -----------------------------------------------------------------
bowtie2 Debian release 2.2.9-2
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Alexandre Mestiashvili (88):
      added debian/ directory
      added myself to uploaders, debhepler version 8, Standards-Vesrion 3.9.2
      set to UNRELEASED, debian/rules help2man for missing man pages
      Fixed minor linitan complains , added ls.h to debain/copyright
      Merge branch 'master' of git+ssh://git.debian.org/git/debian-med/bowtie2
      NEWS removed from bowtie2.docs and used as Upstream's changelog
      Added debian/upstream
      debian/rules using commit of Andreas
      added information about sse_util.h with mising license statement
      uname -m doesn't detect 32 bit chroot env
      added patch fixing #672090
      fixed too-long line in changelog, added versioned URI format for copyright
      updated changelog to reflect git changes
      updated debian/watch and get-orig-source to track -source suffix
      Merge tag 'upstream/2.0.0-beta6'
      add -msse2 only for intel architectures
      updated debian/changelog
      normalized output of dpkg-architecture,
      normalized architecture detection
      updated changelog
      debian/control only i386* and amd64* architecures are supported
      debhelper v9
      debian/rules added hardening flags
      hardening.patch to inject hardening CPPFLAGS
      Merge tag 'upstream/2.0.0-beta7'
      changelog update
      overrided lintian's warning
      added autopkgtest framework support
      updated changelog to reflect cahnages for 2.0.0-beta7-1
      a bit improved test
      Upload to unstable
      updated Uploaders field
      Placed Carlos back to the uploaders.
      Merge tag 'upstream/2.0.4'
      upload to unstable
      Merge tag 'upstream/2.0.5'
      - updated upstream contact
      Merge tag 'upstream/2.0.6'
      push to unstable
      - d/help2man-wrapper:  as kindly suggested by Andreas Tille
      Merge tag 'upstream/2.1.0'
      updated changelog
      updated changelog
      refreshed patches
      updated d/copyright.
      added the header for the patch
      upload to unstable
      - d/control: fixed description for bowtie2-examples,
      updated changelog to reflect changes
      Merge tag 'upstream/2.2.0'
      - d/changelog: new upstream version 2.2.0
      updated changelog
      - d/control: bump Standards-Version
      updated changelog
      UNRELEASED->unstable
      Merge tag 'upstream/2.2.1'
      d/changelog: new upstream version, push to unstable
      Merge tag 'upstream/2.2.2'
      d/changelog: Imported Upstream version 2.2.2, upload to unstable
      Merge tag 'upstream/2.2.3'
      d/changelog: Imported Upstream version 2.2.3, upload to unstable
      d/test/binary-run: test that binary are working
      d/control: add python dependency, needed to build bowtie2-build man page
      d/rules: remove byte-compiled bowtie2-buildc
      upload to unstable
      d/changelog: update timestamp, upload to unstable
      Merge tag 'upstream/2.2.5'
      d/changelog: new upstream version
      d/changelog: upload to experimental
      d/changelog: upload to unstable
      Merge tag 'upstream/2.2.6'
      d/changelog: new upstream release
      debian/bowtie2-examples.install: wrap-and-sort
      d/filter: brush up help2man output
      Merge tag 'upstream/2.2.8'
      d/changelog: Import new upstream version
      d/rules: export DEB_BUILD_MAINT_OPTIONS = hardening=+all
      d/copyright: Merge Files: stanzas and update years
      d/changelog: Update, upload to unstable
      releasing package bowtie2 version 2.2.8-1
      Imported Upstream version 2.2.9
      Merge tag 'upstream/2.2.9'
      Bump Standards-Version
      Update changelog
      Revert the commit with applied patch
      Update hardening.patch
      Cleanup d/rules, remove CPPFLAGS as they are imported anyway
      Update changelog, upload to unstable

Andreas Tille (20):
      More elegant way to specify package name, hope you like this - feel free to revert this suggestion
      Replaced last inctance of bowtie2 by $(pkg)
      Upload to unstable
      Added my "publication of the day"
      prevent -mXX and -msse2 switches for non Intel architectures
      Upload to unstable
      Priority optional as per Debian Med policy
      DEP3 descriptions
      Do not use copy of outdated gcc header file which destroys portability to other architectures.  PLEASE TEST!!!!!
      New upstream version, do not fiddle around with upstream headers even if I think they are doing things wrongly
      do uscan call directly in debian/rules instead of separate script, this solves no problem with uscan but is more straightforward since get-orig-source did only uscan but nothing else
      Merge tag 'upstream/2.2.4'
      small DEP5 fix
      cme fix dpkg-control
      Upload to unstable
      Upload on behalf of Charles
      New upstream version repackaged as xz
      Merge tag 'upstream/2.2.7'
      Refresh patches and delete unused patches
      cme fix dpkg-control

Carlos Borroto (6):
      dropped beta for source files handling in get-orig-source and watch files
      Merge tag 'upstream/2.0.2'
      removed patch bowtie2_gcc4.7, fixed in upstream
      updated changelog to 2.0.2
      added myself to uploaders
      small typo fix in debian/changelog

Charles Plessy (4):
      Removed unused Lintian override (relevant to beta versions).
      Signal the use of git-buildpackage, and turn on pristine-tar by default.
      Quote the content of variables passed to the Makefile.
      Changelog entry.

James McCoy (1):
      Move debian/upstream to debian/upstream/metadata

Sascha Steinbiss (3):
      make build reproducible
      add patch header
      fix spelling

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