[med-svn] r22029 - in trunk/packages: . graphlan graphlan/trunk graphlan/trunk/debian graphlan/trunk/debian/source
Andreas Tille
tille at moszumanska.debian.org
Fri May 27 09:44:54 UTC 2016
Author: tille
Date: 2016-05-27 09:44:53 +0000 (Fri, 27 May 2016)
New Revision: 22029
Added:
trunk/packages/graphlan/
trunk/packages/graphlan/trunk/
trunk/packages/graphlan/trunk/debian/
trunk/packages/graphlan/trunk/debian/changelog
trunk/packages/graphlan/trunk/debian/clean
trunk/packages/graphlan/trunk/debian/compat
trunk/packages/graphlan/trunk/debian/control
trunk/packages/graphlan/trunk/debian/copyright
trunk/packages/graphlan/trunk/debian/examples
trunk/packages/graphlan/trunk/debian/install
trunk/packages/graphlan/trunk/debian/links
trunk/packages/graphlan/trunk/debian/rules
trunk/packages/graphlan/trunk/debian/source/
trunk/packages/graphlan/trunk/debian/source/format
trunk/packages/graphlan/trunk/debian/watch
Log:
Inject initial packaging for graphlan (needs https://bitbucket.org/nsegata/pyphlan)
Added: trunk/packages/graphlan/trunk/debian/changelog
===================================================================
--- trunk/packages/graphlan/trunk/debian/changelog (rev 0)
+++ trunk/packages/graphlan/trunk/debian/changelog 2016-05-27 09:44:53 UTC (rev 22029)
@@ -0,0 +1,7 @@
+graphlan (1.0-1) UNRELEASED; urgency=medium
+
+ * Initial release (Closes: #<bug>)
+ TODO: python-pyphlan
+ https://bitbucket.org/nsegata/pyphlan
+
+ -- Andreas Tille <tille at debian.org> Mon, 23 May 2016 16:09:13 +0200
Added: trunk/packages/graphlan/trunk/debian/clean
===================================================================
--- trunk/packages/graphlan/trunk/debian/clean (rev 0)
+++ trunk/packages/graphlan/trunk/debian/clean 2016-05-27 09:44:53 UTC (rev 22029)
@@ -0,0 +1 @@
+taxcuration/*.pyc
Added: trunk/packages/graphlan/trunk/debian/compat
===================================================================
--- trunk/packages/graphlan/trunk/debian/compat (rev 0)
+++ trunk/packages/graphlan/trunk/debian/compat 2016-05-27 09:44:53 UTC (rev 22029)
@@ -0,0 +1 @@
+9
Added: trunk/packages/graphlan/trunk/debian/control
===================================================================
--- trunk/packages/graphlan/trunk/debian/control (rev 0)
+++ trunk/packages/graphlan/trunk/debian/control 2016-05-27 09:44:53 UTC (rev 22029)
@@ -0,0 +1,26 @@
+Source: graphlan
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ python-all,
+ dh-python
+Standards-Version: 3.9.8
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/graphlan/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/graphlan/trunk/
+Homepage: https://bitbucket.org/nsegata/graphlan/wiki/Home
+
+Package: graphlan
+Architecture: all
+Depends: ${python:Depends},
+ ${misc:Depends},
+ python-biopython,
+ python-numpy,
+ python-matplotlib,
+ python-pyphlan
+Description: circular representations of taxonomic and phylogenetic trees
+ GraPhlAn is a software tool for producing high-quality circular
+ representations of taxonomic and phylogenetic trees. It focuses on
+ concise, integrative, informative, and publication-ready representations
+ of phylogenetically- and taxonomically-driven investigation.
Added: trunk/packages/graphlan/trunk/debian/copyright
===================================================================
--- trunk/packages/graphlan/trunk/debian/copyright (rev 0)
+++ trunk/packages/graphlan/trunk/debian/copyright 2016-05-27 09:44:53 UTC (rev 22029)
@@ -0,0 +1,32 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: PhyloPhlAn
+Upstream-Contact: Nicola Segata <nicola.segata at unitn.it>
+Source: https://bitbucket.org/nsegata/phylophlan/downloads
+
+Files: *
+Copyright: 2012-206 Nicola Segata and Curtis Huttenhower
+License: expat
+
+Files: debian/*
+Copyright: © 2016 maintainername <maintainer at e.mail>
+License: expat
+
+License: expat
+ Permission is hereby granted, free of charge, to any person obtaining a
+ copy of this software and associated documentation files (the
+ "Software"), to deal in the Software without restriction, including
+ without limitation the rights to use, copy, modify, merge, publish,
+ distribute, sublicense, and/or sell copies of the Software, and to
+ permit persons to whom the Software is furnished to do so, subject to
+ the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included
+ in all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
+ OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+ MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
+ IN NO EV ENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
+ CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
+ TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
+ SOFTWARE OR TH E USE OR OTHER DEALINGS IN THE SOFTWARE.
Added: trunk/packages/graphlan/trunk/debian/examples
===================================================================
--- trunk/packages/graphlan/trunk/debian/examples (rev 0)
+++ trunk/packages/graphlan/trunk/debian/examples 2016-05-27 09:44:53 UTC (rev 22029)
@@ -0,0 +1 @@
+examples/*
Added: trunk/packages/graphlan/trunk/debian/install
===================================================================
--- trunk/packages/graphlan/trunk/debian/install (rev 0)
+++ trunk/packages/graphlan/trunk/debian/install 2016-05-27 09:44:53 UTC (rev 22029)
@@ -0,0 +1,2 @@
+graphlan*.py usr/share/graphlan
+src usr/share/graphlan
Added: trunk/packages/graphlan/trunk/debian/links
===================================================================
--- trunk/packages/graphlan/trunk/debian/links (rev 0)
+++ trunk/packages/graphlan/trunk/debian/links 2016-05-27 09:44:53 UTC (rev 22029)
@@ -0,0 +1,2 @@
+usr/share/graphlan/graphlan.py usr/bin/graphlan
+usr/share/graphlan/graphlan_annotate.py usr/bin/graphlan_annotate
Added: trunk/packages/graphlan/trunk/debian/rules
===================================================================
--- trunk/packages/graphlan/trunk/debian/rules (rev 0)
+++ trunk/packages/graphlan/trunk/debian/rules 2016-05-27 09:44:53 UTC (rev 22029)
@@ -0,0 +1,17 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+export LC_ALL=C.UTF-8
+
+
+%:
+ dh $@ --with python2
+
+override_dh_installexamples:
+ dh_installexamples
+ for sh in `find debian/*/usr/share/doc/*/examples -type f -name "*.sh"` ; do \
+ sed -i -e 's/graphlan_annotate.py/graphlan_annotate/g' -e 's/graphlan.py/graphlan/g' $${sh} ; \
+ if ! head -n1 $${sh} | grep -q '/bin/sh' ; then \
+ sed -i '1i #!/bin/sh' $${sh} ; \
+ fi ; \
+ done
Property changes on: trunk/packages/graphlan/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/graphlan/trunk/debian/source/format
===================================================================
--- trunk/packages/graphlan/trunk/debian/source/format (rev 0)
+++ trunk/packages/graphlan/trunk/debian/source/format 2016-05-27 09:44:53 UTC (rev 22029)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/graphlan/trunk/debian/watch
===================================================================
--- trunk/packages/graphlan/trunk/debian/watch (rev 0)
+++ trunk/packages/graphlan/trunk/debian/watch 2016-05-27 09:44:53 UTC (rev 22029)
@@ -0,0 +1,3 @@
+version=3
+
+https://bitbucket.org/nsegata/graphlan/downloads .*/(\d\S*)\.tar\.gz
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