[med-svn] [cain] branch upstream updated (b846fde -> 9e0ff0e)

[Andreas Tille]

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tille pushed a change to branch upstream
in repository cain.

      from  b846fde   Imported Upstream version 1.10+dfsg
       new  9e0ff0e   Imported Upstream version 1.10+dfsg

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 src/solvers/HomogeneousDirect2DSearch.d            | 39 ---------
 src/solvers/HomogeneousDirect2DSearchBubbleSort.d  | 44 ----------
 src/solvers/HomogeneousDirect2DSearchSorted.d      | 44 ----------
 .../HomogeneousDirectAllReactions2DSearch.d        | 41 ---------
 src/solvers/HomogeneousDirectBinarySearch.d        | 34 --------
 .../HomogeneousDirectBinarySearchRecursiveCdf.d    | 35 --------
 src/solvers/HomogeneousDirectBinarySearchSorted.d  | 41 ---------
 .../HomogeneousDirectCompositionRejection.d        | 39 ---------
 src/solvers/HomogeneousDirectLinearSearch.d        | 39 ---------
 .../HomogeneousDirectLinearSearchBubbleSort.d      | 43 ----------
 .../HomogeneousDirectLinearSearchDelayedUpdate.d   | 39 ---------
 src/solvers/HomogeneousDirectLinearSearchSorted.d  | 45 ----------
 .../HomogeneousDirectRejectionBinsSplitting.d      | 45 ----------
 src/solvers/HomogeneousFirstReaction.d             | 29 -------
 src/solvers/HomogeneousFirstReactionAbsoluteTime.d | 31 -------
 src/solvers/HomogeneousFirstReactionInfluence.d    | 31 -------
 ...usHistogramFinalHypoexponentialDirect2DSearch.d | 38 ---------
 src/solvers/HomogeneousHistogramsAverage.d         | 43 ----------
 src/solvers/HomogeneousHistogramsAverageAps.d      | 44 ----------
 .../HomogeneousHistogramsAverageElapsedTime.d      | 46 ----------
 src/solvers/HomogeneousHistogramsDirect2DSearch.d  | 43 ----------
 src/solvers/HomogeneousHistogramsDirectTree.d      | 42 ----------
 .../HomogeneousHistogramsMultiTimeDirect2DSearch.d | 44 ----------
 ...sHistogramsTransientDirectTreeExponentialLast.d | 44 ----------
 ...HistogramsTransientDirectTreeExponentialLimit.d | 44 ----------
 ...ogramsTransientDirectTreeHypoexponentialLimit.d | 45 ----------
 ...togramsTransientDirectTreeNormalApproximation.d | 45 ----------
 .../HomogeneousHybridDirectTauLeapingForward.d     | 51 ------------
 .../HomogeneousHybridDirectTauLeapingMidpoint.d    | 51 ------------
 .../HomogeneousHybridDirectTauLeapingRungeKutta4.d | 51 ------------
 .../HomogeneousNextReactionBinaryHeapGibsonBruck.d | 37 ---------
 .../HomogeneousNextReactionBinaryHeapPair.d        | 37 ---------
 .../HomogeneousNextReactionBinaryHeapPointer.d     | 37 ---------
 src/solvers/HomogeneousNextReactionHashing.d       | 37 ---------
 .../HomogeneousNextReactionHashingGenericList.d    | 39 ---------
 .../HomogeneousNextReactionHashingGenericVector.d  | 39 ---------
 src/solvers/HomogeneousNextReactionHashingVector.d | 39 ---------
 src/solvers/HomogeneousNextReactionLinearSearch.d  | 38 ---------
 .../HomogeneousNextReactionLinearSearchPointer.d   | 36 --------
 .../HomogeneousNextReactionLinearSearchUnrolled.d  | 39 ---------
 .../HomogeneousNextReactionPartitionCostAdaptive.d | 38 ---------
 .../HomogeneousNextReactionPartitionFixedSize.d    | 38 ---------
 .../HomogeneousNextReactionPartitionPropensities.d | 38 ---------
 .../HomogeneousNextReactionPartitionSizeAdaptive.d | 38 ---------
 src/solvers/HomogeneousOdeReactionFixedForward.d   | 19 -----
 src/solvers/HomogeneousOdeReactionFixedMidpoint.d  | 19 -----
 .../HomogeneousOdeReactionFixedRungeKutta4.d       | 19 -----
 ...HomogeneousOdeReactionFixedRungeKuttaCashKarp.d | 20 -----
 .../HomogeneousOdeReactionRungeKuttaCashKarp.d     | 19 -----
 src/solvers/HomogeneousTauLeapingFixedForward.d    | 41 ---------
 src/solvers/HomogeneousTauLeapingFixedMidpoint.d   | 41 ---------
 .../HomogeneousTauLeapingFixedRungeKutta4.d        | 41 ---------
 src/solvers/HomogeneousTauLeapingForward.d         | 41 ---------
 .../HomogeneousTauLeapingForwardNoCorrection.d     | 41 ---------
 .../HomogeneousTauLeapingImplicitFixedEuler.d      | 97 ----------------------
 src/solvers/HomogeneousTauLeapingMidpoint.d        | 41 ---------
 .../HomogeneousTauLeapingMidpointNoCorrection.d    | 41 ---------
 src/solvers/HomogeneousTauLeapingRungeKutta4.d     | 41 ---------
 .../HomogeneousTauLeapingRungeKutta4NoCorrection.d | 42 ----------
 src/solvers/HomogeneousTauLeapingSalFixedLinear.d  | 42 ----------
 src/solvers/HomogeneousTauLeapingSalLinear.d       | 42 ----------
 src/solvers/HomogeneousTrajectoryTreeFull.d        | 31 -------
 62 files changed, 2458 deletions(-)
 delete mode 100644 src/solvers/HomogeneousDirect2DSearch.d
 delete mode 100644 src/solvers/HomogeneousDirect2DSearchBubbleSort.d
 delete mode 100644 src/solvers/HomogeneousDirect2DSearchSorted.d
 delete mode 100644 src/solvers/HomogeneousDirectAllReactions2DSearch.d
 delete mode 100644 src/solvers/HomogeneousDirectBinarySearch.d
 delete mode 100644 src/solvers/HomogeneousDirectBinarySearchRecursiveCdf.d
 delete mode 100644 src/solvers/HomogeneousDirectBinarySearchSorted.d
 delete mode 100644 src/solvers/HomogeneousDirectCompositionRejection.d
 delete mode 100644 src/solvers/HomogeneousDirectLinearSearch.d
 delete mode 100644 src/solvers/HomogeneousDirectLinearSearchBubbleSort.d
 delete mode 100644 src/solvers/HomogeneousDirectLinearSearchDelayedUpdate.d
 delete mode 100644 src/solvers/HomogeneousDirectLinearSearchSorted.d
 delete mode 100644 src/solvers/HomogeneousDirectRejectionBinsSplitting.d
 delete mode 100644 src/solvers/HomogeneousFirstReaction.d
 delete mode 100644 src/solvers/HomogeneousFirstReactionAbsoluteTime.d
 delete mode 100644 src/solvers/HomogeneousFirstReactionInfluence.d
 delete mode 100644 src/solvers/HomogeneousHistogramFinalHypoexponentialDirect2DSearch.d
 delete mode 100644 src/solvers/HomogeneousHistogramsAverage.d
 delete mode 100644 src/solvers/HomogeneousHistogramsAverageAps.d
 delete mode 100644 src/solvers/HomogeneousHistogramsAverageElapsedTime.d
 delete mode 100644 src/solvers/HomogeneousHistogramsDirect2DSearch.d
 delete mode 100644 src/solvers/HomogeneousHistogramsDirectTree.d
 delete mode 100644 src/solvers/HomogeneousHistogramsMultiTimeDirect2DSearch.d
 delete mode 100644 src/solvers/HomogeneousHistogramsTransientDirectTreeExponentialLast.d
 delete mode 100644 src/solvers/HomogeneousHistogramsTransientDirectTreeExponentialLimit.d
 delete mode 100644 src/solvers/HomogeneousHistogramsTransientDirectTreeHypoexponentialLimit.d
 delete mode 100644 src/solvers/HomogeneousHistogramsTransientDirectTreeNormalApproximation.d
 delete mode 100644 src/solvers/HomogeneousHybridDirectTauLeapingForward.d
 delete mode 100644 src/solvers/HomogeneousHybridDirectTauLeapingMidpoint.d
 delete mode 100644 src/solvers/HomogeneousHybridDirectTauLeapingRungeKutta4.d
 delete mode 100644 src/solvers/HomogeneousNextReactionBinaryHeapGibsonBruck.d
 delete mode 100644 src/solvers/HomogeneousNextReactionBinaryHeapPair.d
 delete mode 100644 src/solvers/HomogeneousNextReactionBinaryHeapPointer.d
 delete mode 100644 src/solvers/HomogeneousNextReactionHashing.d
 delete mode 100644 src/solvers/HomogeneousNextReactionHashingGenericList.d
 delete mode 100644 src/solvers/HomogeneousNextReactionHashingGenericVector.d
 delete mode 100644 src/solvers/HomogeneousNextReactionHashingVector.d
 delete mode 100644 src/solvers/HomogeneousNextReactionLinearSearch.d
 delete mode 100644 src/solvers/HomogeneousNextReactionLinearSearchPointer.d
 delete mode 100644 src/solvers/HomogeneousNextReactionLinearSearchUnrolled.d
 delete mode 100644 src/solvers/HomogeneousNextReactionPartitionCostAdaptive.d
 delete mode 100644 src/solvers/HomogeneousNextReactionPartitionFixedSize.d
 delete mode 100644 src/solvers/HomogeneousNextReactionPartitionPropensities.d
 delete mode 100644 src/solvers/HomogeneousNextReactionPartitionSizeAdaptive.d
 delete mode 100644 src/solvers/HomogeneousOdeReactionFixedForward.d
 delete mode 100644 src/solvers/HomogeneousOdeReactionFixedMidpoint.d
 delete mode 100644 src/solvers/HomogeneousOdeReactionFixedRungeKutta4.d
 delete mode 100644 src/solvers/HomogeneousOdeReactionFixedRungeKuttaCashKarp.d
 delete mode 100644 src/solvers/HomogeneousOdeReactionRungeKuttaCashKarp.d
 delete mode 100644 src/solvers/HomogeneousTauLeapingFixedForward.d
 delete mode 100644 src/solvers/HomogeneousTauLeapingFixedMidpoint.d
 delete mode 100644 src/solvers/HomogeneousTauLeapingFixedRungeKutta4.d
 delete mode 100644 src/solvers/HomogeneousTauLeapingForward.d
 delete mode 100644 src/solvers/HomogeneousTauLeapingForwardNoCorrection.d
 delete mode 100644 src/solvers/HomogeneousTauLeapingImplicitFixedEuler.d
 delete mode 100644 src/solvers/HomogeneousTauLeapingMidpoint.d
 delete mode 100644 src/solvers/HomogeneousTauLeapingMidpointNoCorrection.d
 delete mode 100644 src/solvers/HomogeneousTauLeapingRungeKutta4.d
 delete mode 100644 src/solvers/HomogeneousTauLeapingRungeKutta4NoCorrection.d
 delete mode 100644 src/solvers/HomogeneousTauLeapingSalFixedLinear.d
 delete mode 100644 src/solvers/HomogeneousTauLeapingSalLinear.d
 delete mode 100644 src/solvers/HomogeneousTrajectoryTreeFull.d

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