[med-svn] [blasr] 01/02: Build with pbbam

[Afif Elghraoui]

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afif pushed a commit to branch topic/more-utils
in repository blasr.

commit c476399e34ba9925861b53277e424eadd8be8d58
Author: Afif Elghraoui <afif at debian.org>
Date:   Tue Oct 25 00:49:01 2016 -0700

    Build with pbbam
    
    This enhances the functionality of blasr (enabling the --sam option).
---
 debian/TODO    | 2 --
 debian/control | 2 ++
 debian/rules   | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/debian/TODO b/debian/TODO
index 7c4d906..04d3e21 100644
--- a/debian/TODO
+++ b/debian/TODO
@@ -3,5 +3,3 @@
 * Update manpages
 
 * build bax2bam and bam2bax
-
-* Look into building with pbbam
diff --git a/debian/control b/debian/control
index 8508e8f..4a848b7 100644
--- a/debian/control
+++ b/debian/control
@@ -11,6 +11,7 @@ Build-Depends:
 	libblasr-dev,
 	libpbdata-dev,
 	libpbihdf-dev,
+	libpbbam-dev,
 Standards-Version: 3.9.8
 Homepage: https://github.com/PacificBiosciences/blasr
 Vcs-Git: https://anonscm.debian.org/git/debian-med/blasr.git
@@ -24,6 +25,7 @@ Depends:
 	libblasr,
 	libpbdata,
 	libpbihdf,
+	libpbbam,
 Description: mapping single-molecule sequencing reads
  Basic local alignment with successive refinement (BLASR) is a method
  for mapping single-molecule sequencing reads against a reference genome.
diff --git a/debian/rules b/debian/rules
index e3961ee..eb33f93 100755
--- a/debian/rules
+++ b/debian/rules
@@ -15,7 +15,7 @@ export LIBPBIHDF_INC=$(PBSEQ_BASE)/hdf
 	dh $@ --parallel
 
 override_dh_auto_configure:
-	./configure.py --no-pbbam --shared
+	./configure.py --shared
 
 # Tests require data not available in the source distribution
 override_dh_auto_test: ;

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