[med-svn] [abyss] 04/05: Drop outdated/unused patch

[Andreas Tille]

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tille pushed a commit to branch master
in repository abyss.

commit af7a01f46f7dc2268de7fa3622223babb982931e
Author: Andreas Tille <tille at debian.org>
Date:   Tue Nov 1 12:05:56 2016 +0100

    Drop outdated/unused patch
---
 debian/patches/gcc4.8.patch | 105 --------------------------------------------
 1 file changed, 105 deletions(-)

diff --git a/debian/patches/gcc4.8.patch b/debian/patches/gcc4.8.patch
deleted file mode 100644
index 1b8283d..0000000
--- a/debian/patches/gcc4.8.patch
+++ /dev/null
@@ -1,105 +0,0 @@
-Description: -Werror=unused-local-typedefs
-Author: Dmitrijs Ledkovs <xnox at debian.org>
-
---- a/Map/overlap.cc
-+++ b/Map/overlap.cc
-@@ -272,7 +272,6 @@
- /** Read contigs and add vertices to the graph. */
- static void addVertices(const string& path, Graph& g)
- {
--	typedef vertex_property<Graph>::type VP;
- 	if (opt::verbose > 0)
- 		cerr << "Reading `" << path << "'...\n";
- 	ifstream in(path.c_str());
---- a/MergePaths/PathConsensus.cpp
-+++ b/MergePaths/PathConsensus.cpp
-@@ -184,8 +184,6 @@
- static ContigPaths readPaths(const string& inPath,
- 	vector<string>& ids, vector<bool>& isAmb)
- {
--	typedef graph_traits<Graph>::vertex_descriptor V;
--
- 	assert(ids.empty());
- 	assert(isAmb.empty());
- 	assert(g_ambpath_contig.empty());
---- a/Graph/PopBubbles.h
-+++ b/Graph/PopBubbles.h
-@@ -161,7 +161,6 @@
- void scaffoldBubble(Graph& g, const Bubble& bubble)
- {
- 	typedef graph_traits<Graph> GTraits;
--	typedef typename GTraits::adjacency_iterator Ait;
- 	typedef typename GTraits::vertex_descriptor V;
- 	assert(bubble.size() > 2);
- 
---- a/PopBubbles/PopBubbles.cpp
-+++ b/PopBubbles/PopBubbles.cpp
-@@ -464,7 +464,6 @@
-  */
- static void scaffoldBubble(Graph& g, const Bubble& bubble)
- {
--	typedef graph_traits<Graph>::adjacency_iterator Ait;
- 	typedef graph_traits<Graph>::vertex_descriptor V;
- 	assert(opt::scaffold);
- 	assert(bubble.size() > 2);
---- a/Common/cholesky.hpp
-+++ b/Common/cholesky.hpp
-@@ -53,8 +53,6 @@
- {
-   using namespace ublas;
- 
--  typedef typename MATRIX::value_type T;
--
-   assert( A.size1() == A.size2() );
-   assert( A.size1() == L.size1() );
-   assert( A.size2() == L.size2() );
-@@ -95,8 +93,6 @@
- {
-   using namespace ublas;
- 
--  typedef typename MATRIX::value_type T;
--
-   const MATRIX& A_c(A);
- 
-   const size_t n = A.size1();
---- a/Scaffold/drawgraph.cc
-+++ b/Scaffold/drawgraph.cc
-@@ -164,7 +164,6 @@
- 	typedef graph_traits<Graph>::edge_iterator Eit;
- 	typedef graph_traits<Graph>::vertex_descriptor V;
- 	typedef graph_traits<Graph>::vertex_iterator Vit;
--	typedef edge_bundle_type<Graph>::type EP;
- 
- 	Graph g;
- 	if (optind < argc) {
---- a/Scaffold/scaffold.cc
-+++ b/Scaffold/scaffold.cc
-@@ -121,8 +121,6 @@
- static void filterGraph(Graph& g, unsigned minContigLength)
- {
- 	typedef graph_traits<Graph> GTraits;
--	typedef GTraits::edge_descriptor E;
--	typedef GTraits::edge_iterator Eit;
- 	typedef GTraits::vertex_descriptor V;
- 	typedef GTraits::vertex_iterator Vit;
- 
-@@ -237,8 +235,6 @@
-  */
- static void pruneTips(Graph& g)
- {
--	typedef graph_traits<Graph>::vertex_descriptor V;
--
- 	/** Identify the tips. */
- 	size_t n = 0;
- 	pruneTips(g, CountingOutputIterator(n));
---- a/FilterGraph/FilterGraph.cpp
-+++ b/FilterGraph/FilterGraph.cpp
-@@ -279,8 +279,6 @@
- {
- 	typedef graph_traits<Graph> GTraits;
- 	typedef GTraits::vertex_descriptor V;
--	typedef GTraits::out_edge_iterator OEit;
--	typedef GTraits::in_edge_iterator IEit;
- 
- 	vector<vertex_descriptor> out;
- 	out.reserve(sc.size());

-- 
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