[med-svn] [abyss] branch upstream updated (95e61ae -> fe441e4)

[Andreas Tille]

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tille pushed a change to branch upstream
in repository abyss.

      from  95e61ae   New upstream version 2.0.1
       new  fe441e4   Imported Upstream version 2.0.2

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 BloomDBG/bloom-dbg.cc                        |   5 +-
 ChangeLog                                    |   5 +
 Common/Dictionary.h                          |   8 +
 Graph/DotIO.h                                |  59 +++++-
 Graph/GraphIO.h                              |   3 +-
 Graph/Makefile.am                            |   3 +-
 Graph/SAMIO.h                                |   1 +
 Graph/{DirectedGraph.h => UndirectedGraph.h} | 303 +++++++++++++++++++--------
 Konnector/DBGBloom.h                         |   9 +
 README.md                                    |  26 ++-
 Unittest/DBG/LoadAlgorithmTest.cpp           |   1 +
 Unittest/Graph/DotIOTest.cpp                 | 115 ++++++++++
 Unittest/Graph/UndirectedGraphTest.cpp       |  54 +++++
 Unittest/Makefile.am                         |  15 ++
 configure.ac                                 |  13 +-
 doc/ABYSS.1                                  |   2 +-
 doc/abyss-pe.1                               |   2 +-
 doc/abyss-tofastq.1                          |   2 +-
 doc/flowchart.graffle                        |   2 +-
 19 files changed, 513 insertions(+), 115 deletions(-)
 copy Graph/{DirectedGraph.h => UndirectedGraph.h} (66%)
 create mode 100644 Unittest/Graph/DotIOTest.cpp
 create mode 100644 Unittest/Graph/UndirectedGraphTest.cpp

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