[med-svn] [gubbins] branch upstream updated (63f5943 -> 99e8d84)

[Sascha Steinbiss]

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satta pushed a change to branch upstream
in repository gubbins.

      from  63f5943   Imported Upstream version 2.1.0
       new  99e8d84   New upstream version 2.2.0

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 CHANGELOG                                          |  4 ++++
 Dockerfile                                         | 19 +++++++++++++++++++
 README.md                                          | 10 +++++++++-
 VERSION                                            |  2 +-
 python/gubbins/PreProcessFasta.py                  |  9 +++++++--
 python/gubbins/common.py                           |  2 +-
 python/gubbins/tests/test_external_dependancies.py |  1 +
 python/gubbins/tests/test_pre_process_fasta.py     | 22 ++++++++++++++++++----
 python/scripts/run_gubbins.py                      |  1 +
 9 files changed, 61 insertions(+), 9 deletions(-)
 create mode 100644 Dockerfile
 mode change 100644 => 100755 python/gubbins/tests/test_external_dependancies.py

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