[med-svn] r23004 - trunk/packages/R/r-bioc-savr/trunk/debian

[Andreas Tille]

Author: tille
Date: 2016-11-07 12:59:28 +0000 (Mon, 07 Nov 2016)
New Revision: 23004

Modified:
   trunk/packages/R/r-bioc-savr/trunk/debian/changelog
   trunk/packages/R/r-bioc-savr/trunk/debian/control
   trunk/packages/R/r-bioc-savr/trunk/debian/copyright
   trunk/packages/R/r-bioc-savr/trunk/debian/rules
Log:
  * New upstream version
  * Convert to dh-r
  * Generic BioConductor homepage



Modified: trunk/packages/R/r-bioc-savr/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-savr/trunk/debian/changelog	2016-11-06 08:57:21 UTC (rev 23003)
+++ trunk/packages/R/r-bioc-savr/trunk/debian/changelog	2016-11-07 12:59:28 UTC (rev 23004)
@@ -1,3 +1,11 @@
+r-bioc-savr (1.12.0-1) unstable; urgency=medium
+
+  * New upstream version
+  * Convert to dh-r
+  * Generic BioConductor homepage
+
+ -- Andreas Tille <tille at debian.org>  Mon, 07 Nov 2016 13:50:46 +0100
+
 r-bioc-savr (1.10.0-1) unstable; urgency=low
 
   * Initial release (closes: #834720)

Modified: trunk/packages/R/r-bioc-savr/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-savr/trunk/debian/control	2016-11-06 08:57:21 UTC (rev 23003)
+++ trunk/packages/R/r-bioc-savr/trunk/debian/control	2016-11-07 12:59:28 UTC (rev 23004)
@@ -4,7 +4,7 @@
 Section: gnu-r
 Priority: optional
 Build-Depends: debhelper (>= 9),
-               cdbs,
+               dh-r,
                r-base-dev,
                r-cran-ggplot2,
                r-cran-reshape2,
@@ -14,17 +14,14 @@
 Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-savr/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-savr/trunk/
-Homepage: http://bioconductor.org/packages/release/bioc/html/savR.html
+Homepage: https://bioconductor.org/packages/savR/
 
 Package: r-bioc-savr
 Architecture: all
 Depends: ${R:Depends},
-         ${misc:Depends},
-         r-cran-ggplot2,
-         r-cran-reshape2,
-         r-cran-scales,
-         r-cran-gridextra,
-         r-cran-xml
+         ${misc:Depends}
+Recommends: ${R:Recommends}
+Suggests: ${R:Suggests}
 Description: GNU R parse and analyze Illumina SAV files
  This BioConductor module enables to parse Illumina Sequence Analysis
  Viewer (SAV) files, access data, and generate QC plots.

Modified: trunk/packages/R/r-bioc-savr/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-bioc-savr/trunk/debian/copyright	2016-11-06 08:57:21 UTC (rev 23003)
+++ trunk/packages/R/r-bioc-savr/trunk/debian/copyright	2016-11-07 12:59:28 UTC (rev 23004)
@@ -1,7 +1,7 @@
 Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: savR
 Upstream-Contact: R. Brent Calder <brent.calder at einstein.yu.edu>
-Source: http://bioconductor.org/packages/release/bioc/html/savR.html
+Source: https://bioconductor.org/packages/savR/
 
 Files: *
 Copyright: 2013-2016 R. Brent Calder <brent.calder at einstein.yu.edu>

Modified: trunk/packages/R/r-bioc-savr/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-bioc-savr/trunk/debian/rules	2016-11-06 08:57:21 UTC (rev 23003)
+++ trunk/packages/R/r-bioc-savr/trunk/debian/rules	2016-11-07 12:59:28 UTC (rev 23004)
@@ -1,7 +1,8 @@
 #!/usr/bin/make -f
 
-debRreposname=bioc
-include /usr/share/R/debian/r-cran.mk
+%:
+	dh $@ --buildsystem R
 
-install/$(package)::
-	chmod -x $(debRlib)/$(cranNameOrig)/extdata/MiSeq/InterOp/*.bin
+override_dh_fixperms:
+	dh_fixperms
+	find debian -name "*.bin" -exec chmod -x \{\} \;