[med-svn] r23043 - trunk/packages/R/r-cran-qtl/trunk/debian

[Andreas Tille]

Author: tille
Date: 2016-11-11 08:45:19 +0000 (Fri, 11 Nov 2016)
New Revision: 23043

Modified:
   trunk/packages/R/r-cran-qtl/trunk/debian/changelog
   trunk/packages/R/r-cran-qtl/trunk/debian/control
   trunk/packages/R/r-cran-qtl/trunk/debian/copyright
   trunk/packages/R/r-cran-qtl/trunk/debian/rules
   trunk/packages/R/r-cran-qtl/trunk/debian/watch
Log:
  * New upstream version
  * Convert to dh-r
  * Canonical homepage for CRAN
  * d/watch: version=4
  * Recommends: ruby since code contains ruby code



Modified: trunk/packages/R/r-cran-qtl/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-qtl/trunk/debian/changelog	2016-11-11 08:17:01 UTC (rev 23042)
+++ trunk/packages/R/r-cran-qtl/trunk/debian/changelog	2016-11-11 08:45:19 UTC (rev 23043)
@@ -1,3 +1,13 @@
+r-cran-qtl (1.40-8-1) unstable; urgency=medium
+
+  * New upstream version
+  * Convert to dh-r
+  * Canonical homepage for CRAN
+  * d/watch: version=4
+  * Recommends: ruby since code contains ruby code
+
+ -- Andreas Tille <tille at debian.org>  Fri, 11 Nov 2016 09:29:19 +0100
+
 r-cran-qtl (1.39-5-2) unstable; urgency=medium
 
   * Fix installation of test data inside the package

Modified: trunk/packages/R/r-cran-qtl/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-qtl/trunk/debian/control	2016-11-11 08:17:01 UTC (rev 23042)
+++ trunk/packages/R/r-cran-qtl/trunk/debian/control	2016-11-11 08:45:19 UTC (rev 23043)
@@ -3,21 +3,23 @@
 Uploaders: Steffen Moeller <moeller at debian.org>,
            Andreas Tille <tille at debian.org>
 Section: gnu-r
-Testsuite: autopkgtest
 Priority: optional
 Build-Depends: debhelper (>= 9),
-               cdbs,
+               dh-r,
                r-base-dev
 Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-qtl/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-qtl/trunk/
-Homepage: http://www.rqtl.org
+Homepage: https://cran.r-project.org/package=qtl
 
 Package: r-cran-qtl
 Architecture: any
 Depends: ${shlibs:Depends},
+         ${misc:Depends},
          ${R:Depends}
-Suggests: r-cran-snow
+Recommends: ruby,
+            ${R:Recommends}
+Suggests: ${R:Suggests}
 Description: GNU R package for genetic marker linkage analysis
  R/qtl is an extensible, interactive environment for mapping quantitative
  trait loci (QTLs) in experimental crosses. It is implemented as an

Modified: trunk/packages/R/r-cran-qtl/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-qtl/trunk/debian/copyright	2016-11-11 08:17:01 UTC (rev 23042)
+++ trunk/packages/R/r-cran-qtl/trunk/debian/copyright	2016-11-11 08:45:19 UTC (rev 23043)
@@ -1,18 +1,18 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
-Upstream-Name: Qtl
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: qtl
 Upstream-Contact: Karl W. Broman <kbroman at jhsph.edu>,
                   Hao Wu <haowu at jax.org>
-Source: http://cran.r-project.org/src/contrib/
+Source: https://cran.r-project.org/package=qtl
 
 Files: *
-Copyright: 2001-2012 Karl W. Broman <kbroman at jhsph.edu>
+Copyright: 2001-2016 Karl W. Broman <kbroman at jhsph.edu>
                      Hao Wu <haowu at jax.org>,
                      Gary Churchill and Śaunak Sen
 License: GPL-3+
 
 Files: debian/*
 Copyright: 2003-2012 Steffen Moeller <moeller at debian.org>,
-           2009-2012 Andreas Tille <tille at debian.org>
+           2009-2016 Andreas Tille <tille at debian.org>
 License: GPL-3+
 
 License: GPL-3+
@@ -31,4 +31,3 @@
  .
   On a Debian system, the GNU GPL license is distributed in the file
  ‘/usr/share/common-licenses/GPL’.
-

Modified: trunk/packages/R/r-cran-qtl/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-qtl/trunk/debian/rules	2016-11-11 08:17:01 UTC (rev 23042)
+++ trunk/packages/R/r-cran-qtl/trunk/debian/rules	2016-11-11 08:45:19 UTC (rev 23043)
@@ -1,3 +1,8 @@
 #!/usr/bin/make -f
 
-include /usr/share/R/debian/r-cran.mk
+%:
+	dh $@ --buildsystem R
+
+override_dh_fixperms:
+	dh_fixperms
+	find debian -name create-diff.sh -exec chmod +x \{\} \;

Modified: trunk/packages/R/r-cran-qtl/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-cran-qtl/trunk/debian/watch	2016-11-11 08:17:01 UTC (rev 23042)
+++ trunk/packages/R/r-cran-qtl/trunk/debian/watch	2016-11-11 08:45:19 UTC (rev 23043)
@@ -1,3 +1,3 @@
-version=3
+version=4
 http://cran.r-project.org/src/contrib/qtl_([-0-9\.]*).tar.gz