[med-svn] r23045 - trunk/packages/R/r-bioc-biomformat/trunk/debian

[Andreas Tille]

Author: tille
Date: 2016-11-11 09:00:15 +0000 (Fri, 11 Nov 2016)
New Revision: 23045

Modified:
   trunk/packages/R/r-bioc-biomformat/trunk/debian/changelog
   trunk/packages/R/r-bioc-biomformat/trunk/debian/control
   trunk/packages/R/r-bioc-biomformat/trunk/debian/copyright
   trunk/packages/R/r-bioc-biomformat/trunk/debian/rules
   trunk/packages/R/r-bioc-biomformat/trunk/debian/watch
Log:
  * New upstream version
  * Convert to dh-r
  * Generic BioConductor homepage
  * d/watch: version=4



Modified: trunk/packages/R/r-bioc-biomformat/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-biomformat/trunk/debian/changelog	2016-11-11 08:46:02 UTC (rev 23044)
+++ trunk/packages/R/r-bioc-biomformat/trunk/debian/changelog	2016-11-11 09:00:15 UTC (rev 23045)
@@ -1,3 +1,12 @@
+r-bioc-biomformat (1.2.0-1) unstable; urgency=medium
+
+  * New upstream version
+  * Convert to dh-r
+  * Generic BioConductor homepage
+  * d/watch: version=4
+
+ -- Andreas Tille <tille at debian.org>  Fri, 11 Nov 2016 09:51:06 +0100
+
 r-bioc-biomformat (1.0.2-1) unstable; urgency=low
 
   * Initial release (closes: #835579)

Modified: trunk/packages/R/r-bioc-biomformat/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-biomformat/trunk/debian/control	2016-11-11 08:46:02 UTC (rev 23044)
+++ trunk/packages/R/r-bioc-biomformat/trunk/debian/control	2016-11-11 09:00:15 UTC (rev 23045)
@@ -4,7 +4,7 @@
 Section: gnu-r
 Priority: optional
 Build-Depends: debhelper (>= 9),
-               cdbs,
+               dh-r,
                r-base-dev,
                r-cran-plyr,
                r-cran-jsonlite,
@@ -13,16 +13,14 @@
 Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-biomformat/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-biomformat/trunk/
-Homepage: http://bioconductor.org/packages/release/bioc/html/biomformat.html
+Homepage: https://bioconductor.org/packages/biomformat/
 
 Package: r-bioc-biomformat
 Architecture: all
 Depends: ${R:Depends},
-         ${misc:Depends},
-         r-cran-plyr,
-         r-cran-jsonlite,
-         r-cran-matrix,
-         r-cran-hdf5
+         ${misc:Depends}
+Recommends: ${R:Recommends}
+Suggests: ${R:Suggests}
 Description: GNU R interface package for the BIOM file format
  This is an R package for interfacing with the BIOM format. This package
  includes basic tools for reading biom-format files, accessing and

Modified: trunk/packages/R/r-bioc-biomformat/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-bioc-biomformat/trunk/debian/copyright	2016-11-11 08:46:02 UTC (rev 23044)
+++ trunk/packages/R/r-bioc-biomformat/trunk/debian/copyright	2016-11-11 09:00:15 UTC (rev 23045)
@@ -1,7 +1,7 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: biomformat
 Upstream-Contact: Paul J. McMurdie <mcmurdie at stanford.edu>
-Source: http://www.bioconductor.org/packages/release/bioc/html/biomformat.html
+Source: https://bioconductor.org/packages/biomformat/
 
 Files: *
 Copyright: 2012-2016 Paul J. McMurdie <mcmurdie at stanford.edu>

Modified: trunk/packages/R/r-bioc-biomformat/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-bioc-biomformat/trunk/debian/rules	2016-11-11 08:46:02 UTC (rev 23044)
+++ trunk/packages/R/r-bioc-biomformat/trunk/debian/rules	2016-11-11 09:00:15 UTC (rev 23045)
@@ -1,4 +1,4 @@
 #!/usr/bin/make -f
 
-debRreposname=bioc
-include /usr/share/R/debian/r-cran.mk
+%:
+	dh $@ --buildsystem R

Modified: trunk/packages/R/r-bioc-biomformat/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-bioc-biomformat/trunk/debian/watch	2016-11-11 08:46:02 UTC (rev 23044)
+++ trunk/packages/R/r-bioc-biomformat/trunk/debian/watch	2016-11-11 09:00:15 UTC (rev 23045)
@@ -1,3 +1,3 @@
-version=3
+version=4
 opts=downloadurlmangle=s?^(.*)\.\.?http:$1packages/release/bioc? \
  http://www.bioconductor.org/packages/release/bioc/html/biomformat.html .*/biomformat_([\d\.]+)\.tar\.gz