[med-svn] r23059 - in trunk/packages/R: . r-cran-rotl r-cran-rotl/trunk r-cran-rotl/trunk/debian r-cran-rotl/trunk/debian/source r-cran-rotl/trunk/debian/tests
Andreas Tille
tille at moszumanska.debian.org
Sun Nov 13 20:17:29 UTC 2016
Author: tille
Date: 2016-11-13 20:17:27 +0000 (Sun, 13 Nov 2016)
New Revision: 23059
Added:
trunk/packages/R/r-cran-rotl/
trunk/packages/R/r-cran-rotl/trunk/
trunk/packages/R/r-cran-rotl/trunk/debian/
trunk/packages/R/r-cran-rotl/trunk/debian/README.test
trunk/packages/R/r-cran-rotl/trunk/debian/changelog
trunk/packages/R/r-cran-rotl/trunk/debian/compat
trunk/packages/R/r-cran-rotl/trunk/debian/control
trunk/packages/R/r-cran-rotl/trunk/debian/copyright
trunk/packages/R/r-cran-rotl/trunk/debian/docs
trunk/packages/R/r-cran-rotl/trunk/debian/rules
trunk/packages/R/r-cran-rotl/trunk/debian/source/
trunk/packages/R/r-cran-rotl/trunk/debian/source/format
trunk/packages/R/r-cran-rotl/trunk/debian/tests/
trunk/packages/R/r-cran-rotl/trunk/debian/tests/control
trunk/packages/R/r-cran-rotl/trunk/debian/tests/run-unit-test
trunk/packages/R/r-cran-rotl/trunk/debian/watch
Log:
Inject r-cran-rotl
Added: trunk/packages/R/r-cran-rotl/trunk/debian/README.test
===================================================================
--- trunk/packages/R/r-cran-rotl/trunk/debian/README.test (rev 0)
+++ trunk/packages/R/r-cran-rotl/trunk/debian/README.test 2016-11-13 20:17:27 UTC (rev 23059)
@@ -0,0 +1,8 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+To run the unit tests provided by the package you can do
+
+ sh run-unit-test
+
+in this directory.
Added: trunk/packages/R/r-cran-rotl/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-rotl/trunk/debian/changelog (rev 0)
+++ trunk/packages/R/r-cran-rotl/trunk/debian/changelog 2016-11-13 20:17:27 UTC (rev 23059)
@@ -0,0 +1,5 @@
+r-cran-rotl (3.0.1-1) UNRELEASED; urgency=medium
+
+ * Initial release (closes: #xxxxxx)
+
+ -- Andreas Tille <tille at debian.org> Sun, 13 Nov 2016 20:51:08 +0100
Added: trunk/packages/R/r-cran-rotl/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-cran-rotl/trunk/debian/compat (rev 0)
+++ trunk/packages/R/r-cran-rotl/trunk/debian/compat 2016-11-13 20:17:27 UTC (rev 23059)
@@ -0,0 +1 @@
+9
Added: trunk/packages/R/r-cran-rotl/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-rotl/trunk/debian/control (rev 0)
+++ trunk/packages/R/r-cran-rotl/trunk/debian/control 2016-11-13 20:17:27 UTC (rev 23059)
@@ -0,0 +1,31 @@
+Source: r-cran-rotl
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ dh-r,
+ r-base-dev,
+ r-cran-httr,
+ r-cran-jsonlite,
+ r-cran-assertthat,
+ r-cran-rncl,
+ r-cran-ape,
+ r-cran-rentrez
+Standards-Version: 3.9.8
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-rotl/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-rotl/trunk/
+Homepage: https://cran.r-project.org/package=rotl
+
+Package: r-cran-rotl
+Architecture: all
+Depends: ${R:Depends},
+ ${misc:Depends}
+Recommends: ${R:Recommends}
+Suggests: ${R:Suggests}
+Description: GNU R interface to the 'Open Tree of Life' API
+ An interface to the 'Open Tree of Life' API to retrieve phylogenetic
+ trees, information about studies used to assemble the synthetic tree,
+ and utilities to match taxonomic names to 'Open Tree identifiers'. The
+ 'Open Tree of Life' aims at assembling a comprehensive phylogenetic tree
+ for all named species.
Added: trunk/packages/R/r-cran-rotl/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-rotl/trunk/debian/copyright (rev 0)
+++ trunk/packages/R/r-cran-rotl/trunk/debian/copyright 2016-11-13 20:17:27 UTC (rev 23059)
@@ -0,0 +1,37 @@
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: rotl
+Upstream-Contact: Francois Michonneau <francois.michonneau at gmail.com>
+Source: https://cran.r-project.org/package=rotl
+
+Files: *
+Copyright: 2012-2016 Francois Michonneau, Joseph Brown, David Winter [aut]
+License: BSD-2-clause
+
+Files: debian/*
+Copyright: 2016 Andreas Tille <tille at debian.org>
+License: BSD-2-clause
+
+License: BSD-2-clause
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are
+ met:
+ .
+ Redistributions of source code must retain the above copyright
+ notice, this list of conditions and the following disclaimer.
+ .
+ Redistributions in binary form must reproduce the above copyright
+ notice, this list of conditions and the following disclaimer in
+ the documentation and/or other materials provided with the
+ distribution.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+ "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+ LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+ A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
+ HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+ SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+ LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+ DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+ THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
Added: trunk/packages/R/r-cran-rotl/trunk/debian/docs
===================================================================
--- trunk/packages/R/r-cran-rotl/trunk/debian/docs (rev 0)
+++ trunk/packages/R/r-cran-rotl/trunk/debian/docs 2016-11-13 20:17:27 UTC (rev 23059)
@@ -0,0 +1,3 @@
+tests
+debian/README.test
+debian/tests/run-unit-test
Added: trunk/packages/R/r-cran-rotl/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-rotl/trunk/debian/rules (rev 0)
+++ trunk/packages/R/r-cran-rotl/trunk/debian/rules 2016-11-13 20:17:27 UTC (rev 23059)
@@ -0,0 +1,5 @@
+#!/usr/bin/make -f
+
+%:
+ dh $@ --buildsystem R
+
Property changes on: trunk/packages/R/r-cran-rotl/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/R/r-cran-rotl/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-cran-rotl/trunk/debian/source/format (rev 0)
+++ trunk/packages/R/r-cran-rotl/trunk/debian/source/format 2016-11-13 20:17:27 UTC (rev 23059)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/R/r-cran-rotl/trunk/debian/tests/control
===================================================================
--- trunk/packages/R/r-cran-rotl/trunk/debian/tests/control (rev 0)
+++ trunk/packages/R/r-cran-rotl/trunk/debian/tests/control 2016-11-13 20:17:27 UTC (rev 23059)
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @, r-cran-testthat
+Restrictions: allow-stderr
Added: trunk/packages/R/r-cran-rotl/trunk/debian/tests/run-unit-test
===================================================================
--- trunk/packages/R/r-cran-rotl/trunk/debian/tests/run-unit-test (rev 0)
+++ trunk/packages/R/r-cran-rotl/trunk/debian/tests/run-unit-test 2016-11-13 20:17:27 UTC (rev 23059)
@@ -0,0 +1,11 @@
+#!/bin/sh -e
+
+pkg=r-cran-rotl
+if [ "$ADTTMP" = "" ] ; then
+ ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+ trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM
+fi
+cd $ADTTMP
+cp -a /usr/share/doc/${pkg}/tests/* $ADTTMP
+find . -name "*.gz" -exec gunzip \{\} \;
+LC_ALL=C R --no-save < test-all.R
Added: trunk/packages/R/r-cran-rotl/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-cran-rotl/trunk/debian/watch (rev 0)
+++ trunk/packages/R/r-cran-rotl/trunk/debian/watch 2016-11-13 20:17:27 UTC (rev 23059)
@@ -0,0 +1,2 @@
+version=4
+https://cran.r-project.org/src/contrib/rotl_([-\d.]*)\.tar\.gz
More information about the debian-med-commit
mailing list