[med-svn] [ariba] branch master updated (6f94e70 -> 0e678eb)

[Sascha Steinbiss]

This is an automated email from the git hooks/post-receive script.

satta pushed a change to branch master
in repository ariba.

      from  6f94e70   Debian version bump
       new  6f1762d   New upstream version 2.5.0+ds
       new  5d007b8   Updated version 2.5.0+ds from 'upstream/2.5.0+ds'
       new  0e678eb   Debian version bump

The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 ariba/assembly_compare.py                          |  3 +-
 ariba/cdhit.py                                     |  2 +-
 ariba/ext/minimap_ariba.cpp                        |  5 ++++
 ariba/ref_preparer.py                              |  2 +-
 ariba/ref_seq_chooser.py                           | 20 ++++++++-----
 ariba/reference_data.py                            |  2 +-
 ..._chooser_full_run_contained_ref_seq.all_refs.fa | 35 ++++++++++++++++++++++
 ...oser_full_run_contained_ref_seq.cluster_refs.fa | 20 +++++++++++++
 ...q_chooser_full_run_contained_ref_seq.contigs.fa | 10 +++++++
 ariba/tests/ref_seq_chooser_test.py                | 14 +++++++++
 debian/changelog                                   |  7 +++++
 debian/control                                     |  4 +--
 scripts/ariba                                      |  2 +-
 setup.py                                           |  4 +--
 14 files changed, 114 insertions(+), 16 deletions(-)
 create mode 100644 ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa
 create mode 100644 ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa
 create mode 100644 ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa

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