[med-svn] [ariba] 02/03: Updated version 2.5.0+ds from 'upstream/2.5.0+ds'

[Sascha Steinbiss]

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satta pushed a commit to branch master
in repository ariba.

commit 5d007b8e24d78e1dcad03d57b0d13bee3cfca62b
Merge: 6f94e70 6f1762d
Author: Sascha Steinbiss <satta at debian.org>
Date:   Fri Nov 18 19:54:33 2016 +0000

    Updated version 2.5.0+ds from 'upstream/2.5.0+ds'
    
    with Debian dir b40ed438f8e615c28caf63373cf778554f382ead

 ariba/assembly_compare.py                          |  3 +-
 ariba/cdhit.py                                     |  2 +-
 ariba/ext/minimap_ariba.cpp                        |  5 ++++
 ariba/ref_preparer.py                              |  2 +-
 ariba/ref_seq_chooser.py                           | 20 ++++++++-----
 ariba/reference_data.py                            |  2 +-
 ..._chooser_full_run_contained_ref_seq.all_refs.fa | 35 ++++++++++++++++++++++
 ...oser_full_run_contained_ref_seq.cluster_refs.fa | 20 +++++++++++++
 ...q_chooser_full_run_contained_ref_seq.contigs.fa | 10 +++++++
 ariba/tests/ref_seq_chooser_test.py                | 14 +++++++++
 scripts/ariba                                      |  2 +-
 setup.py                                           |  4 +--
 12 files changed, 105 insertions(+), 14 deletions(-)

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