[med-svn] [r-bioc-mergeomics] 03/05: Merge tag 'upstream/1.2.0'
Dylan Aïssi
bob.dybian-guest at moszumanska.debian.org
Fri Nov 18 22:13:07 UTC 2016
This is an automated email from the git hooks/post-receive script.
bob.dybian-guest pushed a commit to branch master
in repository r-bioc-mergeomics.
commit 04b5c965b59f5d6ffcb49f60893ad681e77e98e6
Merge: bc79824 d1f6047
Author: Dylan Aïssi <bob.dybian at gmail.com>
Date: Fri Nov 18 21:51:41 2016 +0100
Merge tag 'upstream/1.2.0'
Upstream version 1.2.0
DESCRIPTION | 20 +
NAMESPACE | 1 +
R/cle.LS.R | 3898 +
R/msea.kda.onestep.R | 69 +
build/vignette.rds | Bin 0 -> 233 bytes
data/job_kda_analyze.RData | Bin 0 -> 403488 bytes
inst/NEWS | 2 +
inst/doc/Mergeomics.R | 274 +
inst/doc/Mergeomics.Rnw | 642 +
inst/doc/Mergeomics.pdf | Bin 0 -> 265347 bytes
inst/extdata/Significant_pathways.info.txt | 17 +
inst/extdata/Significant_pathways.txt | 2351 +
inst/extdata/coexpr.info.txt | 21 +
.../genes.hdlc_040kb_ld70.human_eliminated.txt | 132706 +++++++++++++++
.../marker.hdlc_040kb_ld70.human_eliminated.txt | 76867 +++++++++
inst/extdata/mergedModules.info.txt | 16 +
inst/extdata/mergedModules.txt | 2320 +
inst/extdata/modules.mousecoexpr.liver.human.txt | 2907 +
inst/extdata/msea2kda.nodes.txt | 14879 ++
inst/extdata/network.mouseliver.mouse.txt | 156853 ++++++++++++++++++
inst/extdata/symbols.txt | 20956 +++
inst/unitTests/test_kda.analyze.R | 38 +
inst/unitTests/test_ssea.analyze.R | 29 +
man/MSEA.KDA.onestep.Rd | 94 +
man/Mergeomics-package.Rd | 70 +
man/job.kda.Rd | 19 +
man/kda.analyze.Rd | 97 +
man/kda.analyze.exec.Rd | 102 +
man/kda.analyze.simulate.Rd | 138 +
man/kda.analyze.test.Rd | 127 +
man/kda.configure.Rd | 98 +
man/kda.finish.Rd | 78 +
man/kda.finish.estimate.Rd | 54 +
man/kda.finish.save.Rd | 61 +
man/kda.finish.summarize.Rd | 65 +
man/kda.finish.trim.Rd | 58 +
man/kda.prepare.Rd | 105 +
man/kda.prepare.overlap.Rd | 86 +
man/kda.prepare.screen.Rd | 94 +
man/kda.start.Rd | 96 +
man/kda.start.edges.Rd | 68 +
man/kda.start.identify.Rd | 54 +
man/kda.start.modules.Rd | 70 +
man/kda2cytoscape.Rd | 101 +
man/kda2cytoscape.colorize.Rd | 58 +
man/kda2cytoscape.colormap.Rd | 37 +
man/kda2cytoscape.drivers.Rd | 75 +
man/kda2cytoscape.edges.Rd | 79 +
man/kda2cytoscape.exec.Rd | 103 +
man/kda2cytoscape.identify.Rd | 59 +
man/kda2himmeli.Rd | 84 +
man/kda2himmeli.colorize.Rd | 59 +
man/kda2himmeli.colormap.Rd | 37 +
man/kda2himmeli.drivers.Rd | 77 +
man/kda2himmeli.edges.Rd | 81 +
man/kda2himmeli.exec.Rd | 115 +
man/kda2himmeli.identify.Rd | 59 +
man/ssea.analyze.Rd | 113 +
man/ssea.analyze.observe.Rd | 101 +
man/ssea.analyze.randgenes.Rd | 118 +
man/ssea.analyze.randloci.Rd | 119 +
man/ssea.analyze.simulate.Rd | 113 +
man/ssea.analyze.statistic.Rd | 45 +
man/ssea.control.Rd | 97 +
man/ssea.finish.Rd | 112 +
man/ssea.finish.details.Rd | 102 +
man/ssea.finish.fdr.Rd | 102 +
man/ssea.finish.genes.Rd | 102 +
man/ssea.meta.Rd | 98 +
man/ssea.prepare.Rd | 118 +
man/ssea.prepare.counts.Rd | 107 +
man/ssea.prepare.structure.Rd | 105 +
man/ssea.start.Rd | 110 +
man/ssea.start.configure.Rd | 108 +
man/ssea.start.identify.Rd | 51 +
man/ssea.start.relabel.Rd | 114 +
man/ssea2kda.Rd | 133 +
man/ssea2kda.analyze.Rd | 133 +
man/ssea2kda.import.Rd | 93 +
man/tool.aggregate.Rd | 50 +
man/tool.cluster.Rd | 59 +
man/tool.cluster.static.Rd | 42 +
man/tool.coalesce.Rd | 64 +
man/tool.coalesce.exec.Rd | 55 +
man/tool.coalesce.find.Rd | 58 +
man/tool.coalesce.merge.Rd | 62 +
man/tool.fdr.Rd | 36 +
man/tool.fdr.bh.Rd | 32 +
man/tool.fdr.empirical.Rd | 33 +
man/tool.graph.Rd | 75 +
man/tool.graph.degree.Rd | 94 +
man/tool.graph.list.Rd | 81 +
man/tool.metap.Rd | 43 +
man/tool.normalize.Rd | 49 +
man/tool.normalize.quality.Rd | 41 +
man/tool.overlap.Rd | 46 +
man/tool.read.Rd | 35 +
man/tool.save.Rd | 34 +
man/tool.subgraph.Rd | 51 +
man/tool.subgraph.find.Rd | 53 +
man/tool.subgraph.search.Rd | 59 +
man/tool.subgraph.stats.Rd | 73 +
man/tool.translate.Rd | 37 +
man/tool.unify.Rd | 29 +
tests/runTests.R | 1 +
vignettes/Mergeomics.Rnw | 642 +
vignettes/top5KDs.png | Bin 0 -> 148067 bytes
107 files changed, 421752 insertions(+)
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/r-bioc-mergeomics.git
More information about the debian-med-commit
mailing list