[med-svn] [rambo-k] 01/03: Polish packaging

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository rambo-k.

commit a4c8f6e80dfff7d142a0f64027237994f3caa463
Author: Andreas Tille <tille at debian.org>
Date:   Thu Oct 27 18:24:01 2016 +0200

    Polish packaging
---
 debian/control |  8 +++++---
 debian/docs    |  1 +
 debian/links   |  1 +
 debian/rules   | 18 +++++-------------
 4 files changed, 12 insertions(+), 16 deletions(-)

diff --git a/debian/control b/debian/control
index 68b9520..cbd705a 100644
--- a/debian/control
+++ b/debian/control
@@ -16,9 +16,11 @@ Homepage: http://rambok.sourceforge.net/
 X-Python-Version: >= 2.7
 
 Package: rambo-k
-Architecture: any
-Depends: ${shlibs:Depends},
-         ${misc:Depends}
+Architecture: all
+Depends: ${java:Depends},
+         ${python:Depends},
+         ${misc:Depends},
+         python-sklearn
 Description: Read Assignment Method Based On K-mers
  RAMBO-K is a tool for rapid and sensitive removal of background
  sequences from Next Generation Sequencing data. 
diff --git a/debian/docs b/debian/docs
new file mode 100644
index 0000000..6206b00
--- /dev/null
+++ b/debian/docs
@@ -0,0 +1 @@
+Readme.*
diff --git a/debian/links b/debian/links
new file mode 100644
index 0000000..fbc849f
--- /dev/null
+++ b/debian/links
@@ -0,0 +1 @@
+usr/share/rambo-k/RAMBOK.py	usr/bin/rambo-k
diff --git a/debian/rules b/debian/rules
index 76a1cd2..4a8f8a7 100755
--- a/debian/rules
+++ b/debian/rules
@@ -2,19 +2,7 @@
 
 # DH_VERBOSE := 1
 
-# some helpful variables - uncomment them if needed
-# shamelessly stolen from http://jmtd.net/log/awk/
-#DEBVERS        := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}')
-#VERSION        := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//')
-#DEBFLAVOR      := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}')
-#DEBPKGNAME     := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
-#DEBIAN_BRANCH  := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf)
-#GIT_TAG        := $(subst ~,_,$(VERSION))
-
-# alternatively to manually set those variables you can
-#  include /usr/share/cdbs/1/rules/buildvars.mk
-# and use what is set there.  Any hint whether dh might set variables in
-# a similar manner are welcome.
+DEBPKGNAME     := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
 
 %:
 	dh $@ --with javahelper --with python2
@@ -27,6 +15,10 @@ makejarsimple:
 override_dh_auto_build:
 	CLASSPATH=/usr/share/java/commons-cli.jar:ReadTrainer_eclipse/src/org/rki/readtrainer/:ReadClassifier_eclipse/src/ jh_build rambo-k-classifier.jar ReadClassifier_eclipse ReadTrainer_eclipse
 
+override_dh_fixperms:
+	dh_fixperms
+	chmod +x debian/$(DEBPKGNAME)/usr/share/$(DEBPKGNAME)/RAMBOK.py
+
 get-orig-source:
 	. debian/get-orig-source
 	# uscan --verbose --force-download --compress xz --repack

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/rambo-k.git