[med-svn] [plink1.9] 01/03: Update changelogs

[Dylan Aïssi]

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bob.dybian-guest pushed a commit to branch master
in repository plink1.9.

commit 063a333aa4aa33b0855cf7dba2fdb17417e091e3
Author: Dylan Aïssi <bob.dybian at gmail.com>
Date:   Sun Nov 20 08:34:39 2016 +0100

    Update changelogs
---
 debian/changelog          | 7 +++++++
 debian/upstream.changelog | 8 ++++++--
 2 files changed, 13 insertions(+), 2 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 5aa522b..9ed0241 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,10 @@
+plink1.9 (1.90~b3.44-161117-1) UNRELEASED; urgency=medium
+
+  * New upstream release.
+  * TODO: Fix d/p/01_Fix_use_dynamic_linking.patch
+
+ -- Dylan Aïssi <bob.dybian at gmail.com>  Sun, 20 Nov 2016 08:33:18 +0100
+
 plink1.9 (1.90~b3.43-161010-1) unstable; urgency=medium
 
   * New upstream release.
diff --git a/debian/upstream.changelog b/debian/upstream.changelog
index e41d3f2..fabe62a 100644
--- a/debian/upstream.changelog
+++ b/debian/upstream.changelog
@@ -1,8 +1,12 @@
 # Copy/Paste from https://www.cog-genomics.org/plink2
 
-20 Sep 2016: VCF export no longer erases an alt allele absent from the immediate dataset, due to a retroactive revision to the VCF specification. Fixed '--model gen' permutation testing bug.
+17 Nov 2016: chrX and chrY are no longer mishandled with --chr-set.
 
-10 Sep 2016: --remove-cluster-names + --family bugfix. --indep-pairwise/--indep-pairphase consistency improvements (MAF comparison now takes floating point imprecision into account; a few pairwise comparisons are no longer improperly skipped when the window is kb-based).
+13 Nov: --geno/--missing now treat heterozygous haploid calls as nonmissing; this is consistent with --mind, and PLINK 1.07's behavior with --recode/--make-bed active. They're now inconsistent with what PLINK 1.07 did without --recode/--make-bed; use --make-bed + --set-hh-missing first if you want the old behavior. '--ci 0.95' no longer produces 'L94'/'U94' column names when plink gets unlucky with rounding. Minor --exclude/--extract/--flip bugfix for input files with no newline at the e [...]
+
+20 Sep: VCF export no longer erases an alt allele absent from the immediate dataset, due to a retroactive revision to the VCF specification. Fixed '--model gen' permutation testing bug.
+
+10 Sep: --remove-cluster-names + --family bugfix. --indep-pairwise/--indep-pairphase consistency improvements (MAF comparison now takes floating point imprecision into account; a few pairwise comparisons are no longer improperly skipped when the window is kb-based).
 
 16 Aug: --merge-x 'no-fail' modifier works properly again. '--hard-call-threshold random' bugfix for probabilities with less than 4-digit precision.
 

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