[med-svn] r23137 - in trunk/packages/R/r-cran-boolnet/trunk/debian: . tests

Andreas Tille tille at moszumanska.debian.org
Sat Nov 26 23:18:42 UTC 2016 

Author: tille
Date: 2016-11-26 23:18:41 +0000 (Sat, 26 Nov 2016)
New Revision: 23137

Added:
   trunk/packages/R/r-cran-boolnet/trunk/debian/tests/control
Removed:
   trunk/packages/R/r-cran-boolnet/trunk/debian/tests/control_unused
Modified:
   trunk/packages/R/r-cran-boolnet/trunk/debian/README.test
   trunk/packages/R/r-cran-boolnet/trunk/debian/changelog
   trunk/packages/R/r-cran-boolnet/trunk/debian/compat
   trunk/packages/R/r-cran-boolnet/trunk/debian/control
   trunk/packages/R/r-cran-boolnet/trunk/debian/copyright
   trunk/packages/R/r-cran-boolnet/trunk/debian/docs
   trunk/packages/R/r-cran-boolnet/trunk/debian/rules
   trunk/packages/R/r-cran-boolnet/trunk/debian/tests/run-unit-test
   trunk/packages/R/r-cran-boolnet/trunk/debian/watch
Log:
  * New upstream version
  * Drop Ivo Maintz from Uploaders
  * Convert to dh-r
  * debhelper 10
  * Canonical homepage for CRAN
  * Update d/copyright
  * d/watch: version=4
  * Activate autopkgtest since r-cran-igraph is available now



Modified: trunk/packages/R/r-cran-boolnet/trunk/debian/README.test
===================================================================
--- trunk/packages/R/r-cran-boolnet/trunk/debian/README.test	2016-11-26 08:20:37 UTC (rev 23136)
+++ trunk/packages/R/r-cran-boolnet/trunk/debian/README.test	2016-11-26 23:18:41 UTC (rev 23137)
@@ -1,13 +1,8 @@
 Notes on how this package can be tested.
 ────────────────────────────────────────
 
-To run the unit tests provided by the package you first need
-to install
+Once you have installed r-cran-igraph you can run
 
-   http://cran.r-project.org/web/packages/igraph/
+   sh run-unit-test
 
-Once you have installed igraph you can run
-
-   debian/tests/run-unit-test
-
 from the packaging source.

Modified: trunk/packages/R/r-cran-boolnet/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-boolnet/trunk/debian/changelog	2016-11-26 08:20:37 UTC (rev 23136)
+++ trunk/packages/R/r-cran-boolnet/trunk/debian/changelog	2016-11-26 23:18:41 UTC (rev 23137)
@@ -1,3 +1,16 @@
+r-cran-boolnet (2.1.3-1) unstable; urgency=medium
+
+  * New upstream version
+  * Drop Ivo Maintz from Uploaders
+  * Convert to dh-r
+  * debhelper 10
+  * Canonical homepage for CRAN
+  * Update d/copyright
+  * d/watch: version=4
+  * Activate autopkgtest since r-cran-igraph is available now
+
+ -- Andreas Tille <tille at debian.org>  Sat, 26 Nov 2016 23:52:07 +0100
+
 r-cran-boolnet (2.1.1-1) unstable; urgency=medium
 
   * New upstream version

Modified: trunk/packages/R/r-cran-boolnet/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-cran-boolnet/trunk/debian/compat	2016-11-26 08:20:37 UTC (rev 23136)
+++ trunk/packages/R/r-cran-boolnet/trunk/debian/compat	2016-11-26 23:18:41 UTC (rev 23137)
@@ -1 +1 @@
-9
+10

Modified: trunk/packages/R/r-cran-boolnet/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-boolnet/trunk/debian/control	2016-11-26 08:20:37 UTC (rev 23136)
+++ trunk/packages/R/r-cran-boolnet/trunk/debian/control	2016-11-26 23:18:41 UTC (rev 23137)
@@ -1,26 +1,25 @@
 Source: r-cran-boolnet
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Ivo Maintz <ivo at maintz.de>,
-           Andreas Tille <tille at debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
 Section: gnu-r
 Priority: optional
-Build-Depends: debhelper (>= 9),
+Build-Depends: debhelper (>= 10),
                r-base-dev,
-               cdbs,
+               dh-r,
                r-cran-igraph,
                r-cran-xml
-Standards-Version: 3.9.6
-Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-boolnet/trunk/
+Standards-Version: 3.9.8
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-boolnet/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-boolnet/trunk/
-Homepage: http://www.informatik.uni-ulm.de/ni/mitarbeiter/HKestler/boolnet/
+Homepage: https://cran.r-project.org/package=BoolNet
 
 Package: r-cran-boolnet
 Architecture: any
 Depends: ${shlibs:Depends},
          ${misc:Depends},
-         ${R:Depends},
-         r-cran-igraph,
-         r-cran-xml
+         ${R:Depends}
+Recommends: ${R:Recommends}
+Suggests: ${R:Suggests}
 Description: assembling, analyzing and visualizing Boolean networks
  BoolNet is an R package that provides tools for assembling, analyzing and
  visualizing synchronous and asynchronous Boolean networks as well as

Modified: trunk/packages/R/r-cran-boolnet/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-boolnet/trunk/debian/copyright	2016-11-26 08:20:37 UTC (rev 23136)
+++ trunk/packages/R/r-cran-boolnet/trunk/debian/copyright	2016-11-26 23:18:41 UTC (rev 23137)
@@ -1,11 +1,12 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
-Upstream-Name: boolnet
-Source: http://cran.r-project.org/src/contrib/BoolNet_1.61.tar.gz
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: BoolNet
+Upstream-Contact: Hans A. Kestler <hans.kestler at uni-ulm.de>
+Source: https://cran.r-project.org/package=BoolNet
 
 Files: *
-Copyright: 2012 Hans A. Kestler <hans.kestler at uni-ulm.de>
-           2012 Christoph Muessel
-           2012 Martin Hopfensitz
+Copyright: 2012-2016 Hans A. Kestler <hans.kestler at uni-ulm.de>
+           2012-2016 Christoph Muessel
+           2012-2016 Martin Hopfensitz
 License: Artistic-2.0
 
 Files: src/uthash.h
@@ -31,6 +32,7 @@
 
 Files: debian/*
 Copyright: 2013 Ivo Maintz <ivo at maintz.de>
+           2014-2016 Andreas Tille <tille at debian.org>
 License: Artistic-1.0
 
 License: Artistic-1.0

Modified: trunk/packages/R/r-cran-boolnet/trunk/debian/docs
===================================================================
--- trunk/packages/R/r-cran-boolnet/trunk/debian/docs	2016-11-26 08:20:37 UTC (rev 23136)
+++ trunk/packages/R/r-cran-boolnet/trunk/debian/docs	2016-11-26 23:18:41 UTC (rev 23137)
@@ -1 +1,2 @@
 debian/README.test
+debian/tests/run-unit-test

Modified: trunk/packages/R/r-cran-boolnet/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-boolnet/trunk/debian/rules	2016-11-26 08:20:37 UTC (rev 23136)
+++ trunk/packages/R/r-cran-boolnet/trunk/debian/rules	2016-11-26 23:18:41 UTC (rev 23137)
@@ -1,6 +1,4 @@
 #!/usr/bin/make -f
 
-include /usr/share/R/debian/r-cran.mk
-
-install/$(package)::
-	find debian/$(package)/ -type f -exec chmod 644 {} +
+%:
+	dh $@ --buildsystem R

Copied: trunk/packages/R/r-cran-boolnet/trunk/debian/tests/control (from rev 23136, trunk/packages/R/r-cran-boolnet/trunk/debian/tests/control_unused)
===================================================================
--- trunk/packages/R/r-cran-boolnet/trunk/debian/tests/control	                        (rev 0)
+++ trunk/packages/R/r-cran-boolnet/trunk/debian/tests/control	2016-11-26 23:18:41 UTC (rev 23137)
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @, r-cran-xml, r-cran-igraph
+Restrictions: allow-stderr

Deleted: trunk/packages/R/r-cran-boolnet/trunk/debian/tests/control_unused
===================================================================
--- trunk/packages/R/r-cran-boolnet/trunk/debian/tests/control_unused	2016-11-26 08:20:37 UTC (rev 23136)
+++ trunk/packages/R/r-cran-boolnet/trunk/debian/tests/control_unused	2016-11-26 23:18:41 UTC (rev 23137)
@@ -1,4 +0,0 @@
-Tests: run-unit-test
-# package r-cran-igraph is not yet available - so deactivate this test for the moment
-Depends: @, r-cran-xml, r-cran-igraph
-Restrictions: allow-stderr

Modified: trunk/packages/R/r-cran-boolnet/trunk/debian/tests/run-unit-test
===================================================================
--- trunk/packages/R/r-cran-boolnet/trunk/debian/tests/run-unit-test	2016-11-26 08:20:37 UTC (rev 23136)
+++ trunk/packages/R/r-cran-boolnet/trunk/debian/tests/run-unit-test	2016-11-26 23:18:41 UTC (rev 23137)
@@ -1,13 +1,14 @@
 #!/bin/sh -e
 oname=BoolNet
-pkg=r-cran-`echo $oname | tr [A-Z] [a-z]`
+pkg=r-cran-`echo $oname | tr '[A-Z]' '[a-z]'`
 
 if [ "$ADTTMP" = "" ] ; then
   ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+  trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM
 fi
 cd $ADTTMP
 cp /usr/share/doc/$pkg/examples/vignettes/* $ADTTMP
-gunzip *.gz
+find . -name "*.gz" -exec gunzip \{\} \;
 for rnw in `ls *.[rRS]nw` ; do
 rfile=`echo $rnw | sed 's/\.[rRS]nw/.R/'`
 R --no-save <<EOT
@@ -15,4 +16,3 @@
   source("$rfile", echo=TRUE)
 EOT
 done
-# rm -rf *

Modified: trunk/packages/R/r-cran-boolnet/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-cran-boolnet/trunk/debian/watch	2016-11-26 08:20:37 UTC (rev 23136)
+++ trunk/packages/R/r-cran-boolnet/trunk/debian/watch	2016-11-26 23:18:41 UTC (rev 23137)
@@ -1,2 +1,2 @@
-version=3
+version=4
 http://cran.r-project.org/src/contrib/[Bb][Oo][Oo][Ll][Nn][Ee][Tt]_([\d.-]*)\.tar.gz

More information about the debian-med-commit mailing list