[med-svn] [falcon] branch master updated (334246f -> 7c85812)

[Afif Elghraoui]

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afif pushed a change to branch master
in repository falcon.

      from  334246f   releasing package falcon version 1.8.2-1
       new  58a5f32   Imported Upstream version 1.8.3
       new  7e836cf   Merge tag 'upstream/1.8.3'
       new  6cebedc   Update and refresh patches
       new  80d75ac   build-system.patch: remove unnecessary changes
       new  debfcc8   Drop rdflib-related dependencies
       new  733f831   Drop symlinks for obsolete modes of fc_run
       new  9c64e75   Simplify organization of private Python modules
       new  499171a   Drop dependency on python-six
       new  b316cf4   Add publication information
       new  b9130f3   Drop transitional package
       new  3299136   Improve package description
       new  7c85812   releasing package falcon version 1.8.3-1

The 12 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
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Summary of changes:
 FALCON-examples/git-sym.makefile              |   2 +
 FALCON-examples/makefile                      |   6 +-
 FALCON-examples/run/greg200k-sv2/README.md    |   1 +
 FALCON-examples/run/greg200k-sv2/fc_run.cfg   |  44 ++
 FALCON-examples/run/greg200k-sv2/fc_unzip.cfg |  21 +
 FALCON-examples/run/greg200k-sv2/input.fofn   |   2 +
 FALCON-examples/run/greg200k-sv2/makefile     |  10 +
 FALCON-examples/run/synth0/makefile           |   8 -
 FALCON-make/makefile                          |   2 +-
 FALCON/falcon_kit/bash.py                     |   4 +-
 FALCON/falcon_kit/mains/fetch_reads.py        |  72 +--
 FALCON/falcon_kit/mains/get_read_ctg_map.py   | 180 +++---
 FALCON/falcon_kit/mains/pr_ctg_track.py       |   6 +-
 FALCON/falcon_kit/mains/rr_ctg_track.py       |  10 +-
 FALCON/falcon_kit/mains/run1.py               |  10 +-
 FALCON/test/test_functional.py                |   1 -
 debian/changelog                              |  16 +
 debian/control                                |  32 +-
 debian/fc_run                                 |   2 +-
 debian/links                                  |   2 -
 debian/lintian-overrides                      |   2 +-
 debian/patches/build-system.patch             |  16 +-
 debian/patches/rdflib.patch                   |  32 -
 debian/patches/series                         |   1 -
 debian/patches/versioned-deps.patch           |   8 +-
 debian/rules                                  |   4 +-
 debian/tests/control                          |   2 +-
 debian/upstream/metadata                      |   8 +
 pypeFLOW/pypeflow/common.py                   | 149 -----
 pypeFLOW/pypeflow/controller.py               | 875 -------------------------
 pypeFLOW/pypeflow/data.py                     | 315 ---------
 pypeFLOW/pypeflow/pwatcher_bridge.py          | 391 -----------
 pypeFLOW/pypeflow/pwatcher_workflow.py        |   9 +
 pypeFLOW/pypeflow/simple_pwatcher_bridge.py   |  14 +-
 pypeFLOW/pypeflow/task.py                     | 892 --------------------------
 pypeFLOW/setup.py                             |   9 +-
 36 files changed, 285 insertions(+), 2873 deletions(-)
 create mode 100644 FALCON-examples/run/greg200k-sv2/README.md
 create mode 100755 FALCON-examples/run/greg200k-sv2/fc_run.cfg
 create mode 100644 FALCON-examples/run/greg200k-sv2/fc_unzip.cfg
 create mode 100644 FALCON-examples/run/greg200k-sv2/input.fofn
 create mode 100644 FALCON-examples/run/greg200k-sv2/makefile
 delete mode 100644 debian/patches/rdflib.patch
 create mode 100644 debian/upstream/metadata
 delete mode 100644 pypeFLOW/pypeflow/common.py
 delete mode 100644 pypeFLOW/pypeflow/controller.py
 delete mode 100644 pypeFLOW/pypeflow/data.py
 delete mode 100644 pypeFLOW/pypeflow/pwatcher_bridge.py
 create mode 100644 pypeFLOW/pypeflow/pwatcher_workflow.py
 delete mode 100644 pypeFLOW/pypeflow/task.py

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