[med-svn] [falcon] 02/12: Merge tag 'upstream/1.8.3'

[Afif Elghraoui]

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afif pushed a commit to branch master
in repository falcon.

commit 7e836cfd972d27cd59fb1a609d39ceadf4d3ec5d
Merge: 334246f 58a5f32
Author: Afif Elghraoui <afif at debian.org>
Date:   Sat Nov 26 20:06:39 2016 -0800

    Merge tag 'upstream/1.8.3'
    
    Upstream version 1.8.3

 FALCON-examples/git-sym.makefile              |   2 +
 FALCON-examples/makefile                      |   6 +-
 FALCON-examples/run/greg200k-sv2/README.md    |   1 +
 FALCON-examples/run/greg200k-sv2/fc_run.cfg   |  44 ++
 FALCON-examples/run/greg200k-sv2/fc_unzip.cfg |  21 +
 FALCON-examples/run/greg200k-sv2/input.fofn   |   2 +
 FALCON-examples/run/greg200k-sv2/makefile     |  10 +
 FALCON-examples/run/synth0/makefile           |   8 -
 FALCON-make/makefile                          |   2 +-
 FALCON/falcon_kit/bash.py                     |   4 +-
 FALCON/falcon_kit/mains/fetch_reads.py        |  72 +--
 FALCON/falcon_kit/mains/get_read_ctg_map.py   | 180 +++---
 FALCON/falcon_kit/mains/pr_ctg_track.py       |   6 +-
 FALCON/falcon_kit/mains/rr_ctg_track.py       |  10 +-
 FALCON/falcon_kit/mains/run1.py               |  10 +-
 FALCON/test/test_functional.py                |   1 -
 pypeFLOW/pypeflow/common.py                   | 149 -----
 pypeFLOW/pypeflow/controller.py               | 875 -------------------------
 pypeFLOW/pypeflow/data.py                     | 315 ---------
 pypeFLOW/pypeflow/pwatcher_bridge.py          | 391 -----------
 pypeFLOW/pypeflow/pwatcher_workflow.py        |   9 +
 pypeFLOW/pypeflow/simple_pwatcher_bridge.py   |  14 +-
 pypeFLOW/pypeflow/task.py                     | 892 --------------------------
 pypeFLOW/setup.py                             |   9 +-
 24 files changed, 247 insertions(+), 2786 deletions(-)

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