[med-svn] [rambo-k] branch master updated (cdcce38 -> 9ee4731)

[Andreas Tille]

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tille pushed a change to branch master
in repository rambo-k.

      from  cdcce38   Upload to new
       new  a0932dd   Upstream moved to gitlab
       new  f694887   Download works via normal uscan
       new  91a77ca   Imported Upstream version 1.21+dfsg
       new  59f30a4   Merge tag 'upstream/1.21+dfsg'
       new  6af1bd1   Fix permissions
       new  2e3fc6d   Upstream does provide source for README.pdf now
       new  8da06e4   Manpage
       new  22fe8b1   Upload to unstable
       new  9ee4731   Really prevent compression of pdf file

The 9 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .gitignore                                         |   7 +
 License.txt                                        |   0
 RAMBOK.py                                          |   0
 ReadClassifier_eclipse/.classpath                  |   0
 ReadClassifier_eclipse/.project                    |   0
 ReadClassifier_eclipse/classifier.log              |   1 -
 .../src/org/rki/readclassifier/Classifier.java     |   0
 .../org/rki/readclassifier/ClassifierThread.java   |   0
 .../src/org/rki/readclassifier/DistClassifier.java |   0
 .../org/rki/readclassifier/KmerDistribution.java   |   0
 .../src/org/rki/readclassifier/MMClassifier.java   |   0
 .../src/org/rki/readclassifier/Read.java           |   0
 .../src/org/rki/readclassifier/ReadClassifier.java |   0
 .../src/org/rki/readclassifier/ReadPair.java       |   0
 .../src/org/rki/readclassifier/Reader.java         |   0
 .../src/org/rki/readclassifier/Writer.java         |   0
 ReadTrainer_eclipse/.classpath                     |   0
 ReadTrainer_eclipse/.project                       |   0
 .../src/org/rki/readtrainer/Trainer.java           |   0
 .../src/org/rki/readtrainer/TrainerThread.java     |   0
 Readme.pdf                                         | Bin 0 -> 1321321 bytes
 Readme.txt                                         |   0
 ReadmeLatex_src/Parameter_estimation.png           | Bin 0 -> 748490 bytes
 ReadmeLatex_src/Readme.tex                         | 208 +++++++++++++++++++++
 ReadmeLatex_src/heatmap_batadeno.jpg               | Bin 0 -> 48436 bytes
 ReadmeLatex_src/heatmap_full.png                   | Bin 0 -> 23765 bytes
 ReadmeLatex_src/parameter_estimation_batadeno.png  | Bin 0 -> 780165 bytes
 debian/README.Debian                               |  15 --
 debian/changelog                                   |   4 +-
 debian/copyright                                   |   7 +
 debian/doc-base                                    |  11 ++
 debian/get-orig-source                             |  52 ------
 debian/manpages                                    |   1 +
 debian/rambo-k.1                                   |  81 ++++++++
 debian/rules                                       |   7 +-
 debian/watch                                       |   7 +-
 plot.py                                            |   0
 readme.md                                          | 122 ++++++++++++
 simulate_reads.py                                  |   0
 39 files changed, 446 insertions(+), 77 deletions(-)
 create mode 100644 .gitignore
 mode change 100644 => 100755 License.txt
 mode change 100644 => 100755 RAMBOK.py
 mode change 100644 => 100755 ReadClassifier_eclipse/.classpath
 mode change 100644 => 100755 ReadClassifier_eclipse/.project
 delete mode 100644 ReadClassifier_eclipse/classifier.log
 mode change 100644 => 100755 ReadClassifier_eclipse/src/org/rki/readclassifier/Classifier.java
 mode change 100644 => 100755 ReadClassifier_eclipse/src/org/rki/readclassifier/ClassifierThread.java
 mode change 100644 => 100755 ReadClassifier_eclipse/src/org/rki/readclassifier/DistClassifier.java
 mode change 100644 => 100755 ReadClassifier_eclipse/src/org/rki/readclassifier/KmerDistribution.java
 mode change 100644 => 100755 ReadClassifier_eclipse/src/org/rki/readclassifier/MMClassifier.java
 mode change 100644 => 100755 ReadClassifier_eclipse/src/org/rki/readclassifier/Read.java
 mode change 100644 => 100755 ReadClassifier_eclipse/src/org/rki/readclassifier/ReadClassifier.java
 mode change 100644 => 100755 ReadClassifier_eclipse/src/org/rki/readclassifier/ReadPair.java
 mode change 100644 => 100755 ReadClassifier_eclipse/src/org/rki/readclassifier/Reader.java
 mode change 100644 => 100755 ReadClassifier_eclipse/src/org/rki/readclassifier/Writer.java
 mode change 100644 => 100755 ReadTrainer_eclipse/.classpath
 mode change 100644 => 100755 ReadTrainer_eclipse/.project
 mode change 100644 => 100755 ReadTrainer_eclipse/src/org/rki/readtrainer/Trainer.java
 mode change 100644 => 100755 ReadTrainer_eclipse/src/org/rki/readtrainer/TrainerThread.java
 create mode 100755 Readme.pdf
 mode change 100644 => 100755 Readme.txt
 create mode 100755 ReadmeLatex_src/Parameter_estimation.png
 create mode 100755 ReadmeLatex_src/Readme.tex
 create mode 100755 ReadmeLatex_src/heatmap_batadeno.jpg
 create mode 100755 ReadmeLatex_src/heatmap_full.png
 create mode 100755 ReadmeLatex_src/parameter_estimation_batadeno.png
 delete mode 100644 debian/README.Debian
 create mode 100644 debian/doc-base
 delete mode 100755 debian/get-orig-source
 create mode 100644 debian/manpages
 create mode 100644 debian/rambo-k.1
 mode change 100644 => 100755 plot.py
 create mode 100644 readme.md
 mode change 100644 => 100755 simulate_reads.py

-- 
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