[med-svn] [rambo-k] branch upstream updated (8163f53 -> 91a77ca)

[Andreas Tille]

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tille pushed a change to branch upstream
in repository rambo-k.

      from  8163f53   New upstream version 1.21+r5
       new  91a77ca   Imported Upstream version 1.21+dfsg

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
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Summary of changes:
 .gitignore                                         |   7 +
 License.txt                                        |   0
 RAMBOK.py                                          |   0
 ReadClassifier_eclipse/.classpath                  |   0
 ReadClassifier_eclipse/.project                    |   0
 ReadClassifier_eclipse/classifier.log              |   1 -
 .../src/org/rki/readclassifier/Classifier.java     |   0
 .../org/rki/readclassifier/ClassifierThread.java   |   0
 .../src/org/rki/readclassifier/DistClassifier.java |   0
 .../org/rki/readclassifier/KmerDistribution.java   |   0
 .../src/org/rki/readclassifier/MMClassifier.java   |   0
 .../src/org/rki/readclassifier/Read.java           |   0
 .../src/org/rki/readclassifier/ReadClassifier.java |   0
 .../src/org/rki/readclassifier/ReadPair.java       |   0
 .../src/org/rki/readclassifier/Reader.java         |   0
 .../src/org/rki/readclassifier/Writer.java         |   0
 ReadTrainer_eclipse/.classpath                     |   0
 ReadTrainer_eclipse/.project                       |   0
 .../src/org/rki/readtrainer/Trainer.java           |   0
 .../src/org/rki/readtrainer/TrainerThread.java     |   0
 Readme.pdf                                         | Bin 0 -> 1321321 bytes
 Readme.txt                                         |   0
 ReadmeLatex_src/Parameter_estimation.png           | Bin 0 -> 748490 bytes
 ReadmeLatex_src/Readme.tex                         | 208 +++++++++++++++++++++
 ReadmeLatex_src/heatmap_batadeno.jpg               | Bin 0 -> 48436 bytes
 ReadmeLatex_src/heatmap_full.png                   | Bin 0 -> 23765 bytes
 ReadmeLatex_src/parameter_estimation_batadeno.png  | Bin 0 -> 780165 bytes
 plot.py                                            |   0
 readme.md                                          | 122 ++++++++++++
 simulate_reads.py                                  |   0
 30 files changed, 337 insertions(+), 1 deletion(-)
 create mode 100644 .gitignore
 mode change 100644 => 100755 License.txt
 mode change 100644 => 100755 RAMBOK.py
 mode change 100644 => 100755 ReadClassifier_eclipse/.classpath
 mode change 100644 => 100755 ReadClassifier_eclipse/.project
 delete mode 100644 ReadClassifier_eclipse/classifier.log
 mode change 100644 => 100755 ReadClassifier_eclipse/src/org/rki/readclassifier/Classifier.java
 mode change 100644 => 100755 ReadClassifier_eclipse/src/org/rki/readclassifier/ClassifierThread.java
 mode change 100644 => 100755 ReadClassifier_eclipse/src/org/rki/readclassifier/DistClassifier.java
 mode change 100644 => 100755 ReadClassifier_eclipse/src/org/rki/readclassifier/KmerDistribution.java
 mode change 100644 => 100755 ReadClassifier_eclipse/src/org/rki/readclassifier/MMClassifier.java
 mode change 100644 => 100755 ReadClassifier_eclipse/src/org/rki/readclassifier/Read.java
 mode change 100644 => 100755 ReadClassifier_eclipse/src/org/rki/readclassifier/ReadClassifier.java
 mode change 100644 => 100755 ReadClassifier_eclipse/src/org/rki/readclassifier/ReadPair.java
 mode change 100644 => 100755 ReadClassifier_eclipse/src/org/rki/readclassifier/Reader.java
 mode change 100644 => 100755 ReadClassifier_eclipse/src/org/rki/readclassifier/Writer.java
 mode change 100644 => 100755 ReadTrainer_eclipse/.classpath
 mode change 100644 => 100755 ReadTrainer_eclipse/.project
 mode change 100644 => 100755 ReadTrainer_eclipse/src/org/rki/readtrainer/Trainer.java
 mode change 100644 => 100755 ReadTrainer_eclipse/src/org/rki/readtrainer/TrainerThread.java
 create mode 100755 Readme.pdf
 mode change 100644 => 100755 Readme.txt
 create mode 100755 ReadmeLatex_src/Parameter_estimation.png
 create mode 100755 ReadmeLatex_src/Readme.tex
 create mode 100755 ReadmeLatex_src/heatmap_batadeno.jpg
 create mode 100755 ReadmeLatex_src/heatmap_full.png
 create mode 100755 ReadmeLatex_src/parameter_estimation_batadeno.png
 mode change 100644 => 100755 plot.py
 create mode 100644 readme.md
 mode change 100644 => 100755 simulate_reads.py

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