[med-svn] [qcumber] 05/05: Fix trimmomatic adapter path

[Andreas Tille]

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tille pushed a commit to branch master
in repository qcumber.

commit a11c7457a25b74035e7ad84b4212f99fe7bb2149
Author: Andreas Tille <tille at debian.org>
Date:   Tue Nov 29 09:55:40 2016 +0100

    Fix trimmomatic adapter path
---
 debian/patches/adapt_config.patch | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/debian/patches/adapt_config.patch b/debian/patches/adapt_config.patch
index b5a0c5d..2ed3767 100644
--- a/debian/patches/adapt_config.patch
+++ b/debian/patches/adapt_config.patch
@@ -11,10 +11,11 @@ Description: Use Debian packaged locations
  
  [PATH]
 -kraken =
-+kraken = /usr/lib/kraken
- adapter = /data/GS/tools/Trimmomatic-0.32/adapters/
+-adapter = /data/GS/tools/Trimmomatic-0.32/adapters/
 -fastqc = /home/lieuv/tools/FastQC/
 -trimmomatic =
++kraken = /usr/lib/kraken
++adapter = /usr/share/trimmomatic/
 +fastqc = 
 +trimmomatic = /usr/bin/
  bowtie2 =

-- 
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