[med-svn] [falcon] branch upstream updated (2a04b8e -> 58a5f32)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a change to branch upstream
in repository falcon.

      from  2a04b8e   Imported Upstream version 1.8.2
      adds  58a5f32   Imported Upstream version 1.8.3

No new revisions were added by this update.

Summary of changes:
 FALCON-examples/git-sym.makefile              |   2 +
 FALCON-examples/makefile                      |   6 +-
 FALCON-examples/run/greg200k-sv2/README.md    |   1 +
 FALCON-examples/run/greg200k-sv2/fc_run.cfg   |  44 ++
 FALCON-examples/run/greg200k-sv2/fc_unzip.cfg |  21 +
 FALCON-examples/run/greg200k-sv2/input.fofn   |   2 +
 FALCON-examples/run/greg200k-sv2/makefile     |  10 +
 FALCON-examples/run/synth0/makefile           |   8 -
 FALCON-make/makefile                          |   2 +-
 FALCON/falcon_kit/bash.py                     |   4 +-
 FALCON/falcon_kit/mains/fetch_reads.py        |  72 +--
 FALCON/falcon_kit/mains/get_read_ctg_map.py   | 180 +++---
 FALCON/falcon_kit/mains/pr_ctg_track.py       |   6 +-
 FALCON/falcon_kit/mains/rr_ctg_track.py       |  10 +-
 FALCON/falcon_kit/mains/run1.py               |  10 +-
 FALCON/test/test_functional.py                |   1 -
 pypeFLOW/pypeflow/common.py                   | 149 -----
 pypeFLOW/pypeflow/controller.py               | 875 -------------------------
 pypeFLOW/pypeflow/data.py                     | 315 ---------
 pypeFLOW/pypeflow/pwatcher_bridge.py          | 391 -----------
 pypeFLOW/pypeflow/pwatcher_workflow.py        |   9 +
 pypeFLOW/pypeflow/simple_pwatcher_bridge.py   |  14 +-
 pypeFLOW/pypeflow/task.py                     | 892 --------------------------
 pypeFLOW/setup.py                             |   9 +-
 24 files changed, 247 insertions(+), 2786 deletions(-)
 create mode 100644 FALCON-examples/run/greg200k-sv2/README.md
 create mode 100755 FALCON-examples/run/greg200k-sv2/fc_run.cfg
 create mode 100644 FALCON-examples/run/greg200k-sv2/fc_unzip.cfg
 create mode 100644 FALCON-examples/run/greg200k-sv2/input.fofn
 create mode 100644 FALCON-examples/run/greg200k-sv2/makefile
 delete mode 100644 pypeFLOW/pypeflow/common.py
 delete mode 100644 pypeFLOW/pypeflow/controller.py
 delete mode 100644 pypeFLOW/pypeflow/data.py
 delete mode 100644 pypeFLOW/pypeflow/pwatcher_bridge.py
 create mode 100644 pypeFLOW/pypeflow/pwatcher_workflow.py
 delete mode 100644 pypeFLOW/pypeflow/task.py

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