[med-svn] [last-align] branch master updated (43e919c -> c5c9c98)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository last-align.

      from  43e919c   New upstream version
       new  fe2831f   New upstream version 809
       new  d00960e   Merge tag 'upstream/809'
       new  74c094a   New upstream version
       new  b042dd0   debhelper 10
       new  c9cd810   d/watch: version=4
       new  c5c9c98   Spelling in doc-base + upload to unstable

The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 ChangeLog.txt                               | 225 +++++++-
 debian/changelog                            |   8 +
 debian/compat                               |   2 +-
 debian/control                              |   2 +-
 debian/last-align.doc-base.last-align-seeds |   2 +-
 debian/watch                                |   2 +-
 doc/last-split.html                         |   8 +
 doc/last-split.txt                          |   8 +
 doc/last-train.html                         |  18 +-
 doc/last-train.txt                          |  21 +-
 doc/maf-convert.html                        |   5 +
 doc/maf-convert.txt                         |   5 +
 scripts/last-postmask                       |  17 +-
 scripts/last-train                          | 166 ++++--
 scripts/maf-convert                         | 867 ++++++++++++++++------------
 src/LastalArguments.cc                      |   2 +
 src/split/cbrc_split_aligner.cc             | 558 +++++++++---------
 src/split/cbrc_split_aligner.hh             |  62 +-
 src/split/last-split-main.cc                |  20 +-
 src/split/last-split.cc                     |  11 +-
 src/split/last-split.hh                     |   2 +
 src/stringify.hh                            |  24 +-
 src/version.hh                              |   2 +-
 23 files changed, 1298 insertions(+), 739 deletions(-)

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