[med-svn] [last-align] 02/06: Merge tag 'upstream/809'

[Andreas Tille]

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tille pushed a commit to branch master
in repository last-align.

commit d00960e942bab76586eb60217c039bc44689940c
Merge: 43e919c fe2831f
Author: Andreas Tille <tille at debian.org>
Date:   Wed Nov 30 16:02:09 2016 +0100

    Merge tag 'upstream/809'
    
    Upstream version 809

 ChangeLog.txt                   | 225 ++++++++++-
 doc/last-split.html             |   8 +
 doc/last-split.txt              |   8 +
 doc/last-train.html             |  18 +-
 doc/last-train.txt              |  21 +-
 doc/maf-convert.html            |   5 +
 doc/maf-convert.txt             |   5 +
 scripts/last-postmask           |  17 +-
 scripts/last-train              | 166 ++++++--
 scripts/maf-convert             | 867 ++++++++++++++++++++++------------------
 src/LastalArguments.cc          |   2 +
 src/split/cbrc_split_aligner.cc | 558 ++++++++++++++------------
 src/split/cbrc_split_aligner.hh |  62 +--
 src/split/last-split-main.cc    |  20 +-
 src/split/last-split.cc         |  11 +-
 src/split/last-split.hh         |   2 +
 src/stringify.hh                |  24 +-
 src/version.hh                  |   2 +-
 18 files changed, 1286 insertions(+), 735 deletions(-)

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