[med-svn] [python-pbcore] 02/06: Merge tag 'upstream/1.2.10+dfsg'

[Afif Elghraoui]

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afif pushed a commit to branch master
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commit 06db5ad67172f65cce24a7db7526a79923c8f629
Merge: 0bf210c a06a1f0
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Sat Oct 8 14:54:42 2016 -0700

    Merge tag 'upstream/1.2.10+dfsg'
    
    Upstream version 1.2.10+dfsg

 CHANGELOG.org                          |   5 +
 pbcore/__init__.py                     |   2 +-
 pbcore/chemistry/resources/mapping.xml |  71 ++++++-
 pbcore/io/align/BamAlignment.py        |   2 +-
 pbcore/io/align/PacBioBamIndex.py      |  17 ++
 pbcore/io/dataset/DataSetErrors.py     |  17 ++
 pbcore/io/dataset/DataSetIO.py         | 313 +++++++++++++++++++++--------
 pbcore/io/dataset/DataSetMembers.py    | 185 ++++++++++++------
 pbcore/io/dataset/DataSetReader.py     |  44 ++++-
 pbcore/io/dataset/utils.py             |  81 +++++++-
 requirements.txt                       |   2 +-
 tests/test_pbcore_io_AlnFileReaders.py |  19 ++
 tests/test_pbdataset.py                | 348 ++++++++++++++++++++++++++++++++-
 tests/test_pbdataset_subtypes.py       | 129 +++++++++++-
 14 files changed, 1073 insertions(+), 162 deletions(-)

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